View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12847_low_1 (Length: 563)
Name: NF12847_low_1
Description: NF12847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12847_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 469501 - 468982
Alignment:
| Q |
19 |
ttaatatgtattagtatcagacagataacgtgtctagacacgcatgagtggaactgagagttagaagcgattgaatgtaattatatatgtcggtagtaat |
118 |
Q |
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| T |
469501 |
ttaatatgtattagtatcagacagataacgtgtttagacacgcatgagtggaactgagagttagaagcgattgaatgtaattatatatgtccgtagtaat |
469402 |
T |
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| Q |
119 |
ttgagaaaatggaagttataattagaaacgactgagtgtaatcatatgcgtcacatatcatatggcatgtatgagacatgtcttcaatatgaagtctcaa |
218 |
Q |
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| T |
469401 |
ttgagaaaatggaagttatagttagaaacgattgagtgtaatcatatgtgtcacatatcatatggcatgtatgagacatgtcttcaatatgaagtctcaa |
469302 |
T |
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| Q |
219 |
tactacatatcatatgaccannnnnnnnnnnnnnnnnnnnnnnnagctaacaactttatccattcacccttcgtagaatgctttagcatttaatcaatca |
318 |
Q |
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| T |
469301 |
tactacatatcatatgaacattttttgattttattttgaattttagctaacaactttatccattcacccttcgtagaatgctttagcatctaatcaatca |
469202 |
T |
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| Q |
319 |
aatgtatcatagagtaatgacatagaatcataggaacgatctctttaacactctttttgacactcactctattattgagtgaaatcatatcatataggtc |
418 |
Q |
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| T |
469201 |
aatgtatcatagagtaatgacataggatcataggaacaatcactttaacactctttttgacactcactctattattgagtgaaatcatatcatataggtc |
469102 |
T |
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| Q |
419 |
ctaccatgttatgtgagacaaatttttataattgtgggacccacgtcaataaaagagtgagtgttggaaaaagagtgttaaattgagtgttcttaacttc |
518 |
Q |
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| T |
469101 |
ctaccatgttatgtgagacaaatttttataattgtgggacccatgtcaataaaagagtgagtgttggaaaaagagtgttaaattgagtgttcttaacttc |
469002 |
T |
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| Q |
519 |
ttaacactcttaatgattgc |
538 |
Q |
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| T |
469001 |
ttaacactcctaatgtttgc |
468982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 15508938 - 15508978
Alignment:
| Q |
365 |
aacactctttttgacactcactctattattgagtgaaatca |
405 |
Q |
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| T |
15508938 |
aacactctttctaacactcactcttttattgagtgaaatca |
15508978 |
T |
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