View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12847_low_4 (Length: 300)
Name: NF12847_low_4
Description: NF12847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12847_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 37704683 - 37704982
Alignment:
| Q |
1 |
taagataacaaattcatttaagtatcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggag |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704683 |
taagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggag |
37704782 |
T |
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| Q |
101 |
acttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatca |
200 |
Q |
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| T |
37704783 |
acttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcggttttttaagattttttcgtatca |
37704882 |
T |
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| Q |
201 |
cttacgtcatttaagttatttaattatcacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcataacacttaggtcgttt |
300 |
Q |
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| T |
37704883 |
cttgcgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcgtaacacttaggtcgttt |
37704982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 37699208 - 37699349
Alignment:
| Q |
1 |
taagataacaaattcatttaagtatcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaa |
94 |
Q |
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| T |
37699208 |
taagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagca |
37699307 |
T |
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| Q |
95 |
tcggagacttagacttcttcaaatgtacatactttaaagagc |
136 |
Q |
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| T |
37699308 |
acggagacttagacttcttcaactgaacagactttaaagagc |
37699349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37437748 - 37437823
Alignment:
| Q |
1 |
taagataacaaattcatttaagtatcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa |
76 |
Q |
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| T |
37437748 |
taagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa |
37437823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 16841002 - 16840857
Alignment:
| Q |
1 |
taagataacaaattcatttaagtatcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaattgtattt |
90 |
Q |
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|||||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||||||| |||||||| ||||||| |
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| T |
16841002 |
taagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaaatgtattt |
16840903 |
T |
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| Q |
91 |
agaatcggagacttagacttcttcaaatgtacatactttaaagagc |
136 |
Q |
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| T |
16840902 |
agaagcggagacttagacttcgtcaactatccatactttaaagagc |
16840857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
| Q |
196 |
tatcacttacgtcatttaagttatttaattatcacaagtta |
236 |
Q |
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| T |
31095092 |
tatcacttacgtcctttaagttatttaattataacaagtta |
31095132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
| Q |
196 |
tatcacttacgtcatttaagttatttaattatcacaagttagt |
238 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| |
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| T |
17411089 |
tatcacttacgtcatttaagttatttaattgtaacaagttagt |
17411131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 196287 - 196257
Alignment:
| Q |
195 |
gtatcacttacgtcatttaagttatttaatt |
225 |
Q |
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| T |
196287 |
gtatcacttacgtcatttaagttatttaatt |
196257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
| Q |
196 |
tatcacttacgtcatttaagttatttaattatcacaagttagttat |
241 |
Q |
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| T |
18080600 |
tatcacttacgtcatttaagttatttaattgtaataagttagttat |
18080645 |
T |
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