View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12847_low_5 (Length: 210)
Name: NF12847_low_5
Description: NF12847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12847_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 27736162 - 27736344
Alignment:
| Q |
17 |
ccattaataccggaacttaaaatacttacggtctgataatagccacggtttccgtcaaaaggatgtggcaacttgatttgaagtttgttctcatatctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27736162 |
ccattaataccggaacttaaaatacttacggtctgataatagccacggtttccgtcaaaaggatgtggcaacttgatttgaagtttgttctcatatctct |
27736261 |
T |
|
| Q |
117 |
caccaaaaagcaaatacaacttccattgattcacagtactatcaaaatagtttagaaggagacatgcttcatcatacagtgaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27736262 |
caccaaaaagcaaatacaacttccattgattcacagtactatcaaaatagtttagaaggagacatgcttcatcatacagtgaa |
27736344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 27724948 - 27725096
Alignment:
| Q |
51 |
gataatagccacggtttccgtcaaaaggatgtggcaacttgatttgaagtttgttctcatatctctcaccaaaaagcaaatacaacttccattgattcac |
150 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||| |||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
27724948 |
gataatagccatagtttctgtcaaaaggatgaggccacttcatttgaactttactctcatatctctcaccggaaagcaaatacaacttccattgattctc |
27725047 |
T |
|
| Q |
151 |
agtactatcaaaatagtttagaaggagacatgcttcatcatacagtgaa |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27725048 |
agtactctcaaaatagtttagaaggagacatgcttcatgatacagtgaa |
27725096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 14682597 - 14682689
Alignment:
| Q |
51 |
gataatagccacggtttccgtcaaaaggatgtggcaacttgatttgaagtttgttctcatatctctcaccaaaaagcaaatacaacttccatt |
143 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||| |||| ||||||| |||||||||| ||||||||||| |||| |||||||||||||||| |
|
|
| T |
14682597 |
gataacagccacgtttttggtcaaaaggatgtggccacttcatttgaactttgttctcaaatctctcaccagaaagaaaatacaacttccatt |
14682689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University