View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12848_high_2 (Length: 469)
Name: NF12848_high_2
Description: NF12848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12848_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 40384084 - 40383815
Alignment:
| Q |
11 |
cacagagaatgatagagcaaaaaattgataaatgtagtataccttaatcccattgtatcctagacgctcgccaagaccgccagcaacaagaacaaaagca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40384084 |
cacagagaatgatagagcaaaaaattgataaatgtagtataccttaatcccattgtatcctagacgctcaccaagaccgccagcaacaagaacaaaagca |
40383985 |
T |
|
| Q |
111 |
gctctgcgagcttcacgcacacctgcttcctcaaatttgatgaaattctcatcaccaaacgtcaatgtctcaccagttggaacctgcaaaatcattacta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383984 |
gctctgcgagcttcacgcacacctgcttcctcaaatttgatgaaattctcatcaccaaacgtcaatgtctcaccagttggaacctgcaaaatcattacta |
40383885 |
T |
|
| Q |
211 |
aacagtcttacacattattccattccacgaacatgcacaaacgaacagatcacgtcatacagataatttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
40383884 |
aacagtcttacacattattccattccacgaacatgcacaaaagaacagatcatgtcatacagataatttt |
40383815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 40383652 - 40383606
Alignment:
| Q |
406 |
tgataattgtgacttacggaaggggtgaagccatcaaaagggttagt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383652 |
tgataattgtgacttacggaaggggtgaagccatcaaaagggttagt |
40383606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 314
Target Start/End: Complemental strand, 40383770 - 40383740
Alignment:
| Q |
284 |
aaaaagttttacaccaacattgcatggaaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40383770 |
aaaaagttttacaccaacattgcatggaaat |
40383740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University