View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12848_low_1 (Length: 609)
Name: NF12848_low_1
Description: NF12848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12848_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 20 - 600
Target Start/End: Complemental strand, 42926072 - 42925492
Alignment:
| Q |
20 |
ggttctcctctcaggcttgcttttgagtcttcctgtgtgaaaactcttcagttcatgtcatctcctggttcggtttctccaccggtggagtctcctccga |
119 |
Q |
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| T |
42926072 |
ggttctcctctcaggcttgcttttgagtcttcctgtgtgaaaactcttcaattcatgtcatctcctggttcggtttctccaccggtggagtctcctccga |
42925973 |
T |
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| Q |
120 |
tgtctccgatgactcgatctttgggaagatctgtgggttctagctctgtaaatgaaatggtggcttctctgagaaacttacaacttggcaccatgaagtc |
219 |
Q |
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| T |
42925972 |
tgtctccgatgactcgatctttgggaagatctgtgggttctagctctgtgaatgaaatggtggcttctctgagaaacttacaacttggtaccatgaagtc |
42925873 |
T |
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| Q |
220 |
attaccttcttcatggaatgttcaaatgggttctcctagattcggatctccgagaggacccgtgatccgacccggattctgtagcctaccatcgacacct |
319 |
Q |
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| T |
42925872 |
attaccttcttcatggaatgttcaaatgggttctcctagattcggatctccgagaggacccgtgatccgacccggattctgtagcctaccatcgacacct |
42925773 |
T |
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| Q |
320 |
acacaggtgccgagtcgtggtagggttaatcattttgatctttgggatcagagttgtgaggaagagcctgtgatggagagggtggaatctggaagagata |
419 |
Q |
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| T |
42925772 |
acacaggtgccgagtcgtggtagggttaatcattttgatctttgggatcagagttgtgaagaagagcctgtgatggagagggtggaatctggaagagata |
42925673 |
T |
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| Q |
420 |
taagggtgaagatgtttgagaaactgagcaaagagaactcttttaatggatcgggtatgggttcaggttcaggttcgggtgaagttgttgaggatccgga |
519 |
Q |
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| T |
42925672 |
taagggtgaagatgtttgagaaactgagcaaagagaactcttttaatggatcgggcatgggttcaggttcaggtttgggtgaagttgttgaggatccgga |
42925573 |
T |
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| Q |
520 |
tgttgggtgggtttcggagctggtgagccctttcttgggtgattgaatgttgatgatttcattttgggtttgtcgtctgtg |
600 |
Q |
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| T |
42925572 |
tgttgggtgggtttcggagctggtgagccctttcttgggtgattgaatgttgatgatttcattttgggtttgtcgtctgtg |
42925492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 453
Target Start/End: Original strand, 34340791 - 34340891
Alignment:
| Q |
353 |
tttgatctttgggatcagagttgtgaggaagagcctgtgatggagagggtggaatctggaagagatataagggtgaagatgtttgagaaactgagcaaag |
452 |
Q |
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| T |
34340791 |
tttgatttatgggatcagagttgtgaagaggagcctataatggagagagttgagagtggaagagatattagggctaagatgtttgagaaattaagcaaag |
34340890 |
T |
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| Q |
453 |
a |
453 |
Q |
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| T |
34340891 |
a |
34340891 |
T |
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Back To:
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