View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12848_low_4 (Length: 373)
Name: NF12848_low_4
Description: NF12848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12848_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 7446557 - 7446419
Alignment:
| Q |
11 |
cagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttgg |
110 |
Q |
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| T |
7446557 |
cagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttgg |
7446458 |
T |
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| Q |
111 |
aattaaaaaatttatgtctagttataatccaatcaactg |
149 |
Q |
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| T |
7446457 |
aattaaaaaatttatgtcaagttataatccaatccactg |
7446419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 7446360 - 7446215
Alignment:
| Q |
211 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
310 |
Q |
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| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
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| Q |
311 |
cttgttcttccacctagcccttcgattctggaaccatactgcaact |
356 |
Q |
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| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaact |
7446215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 7461304 - 7461159
Alignment:
| Q |
211 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
310 |
Q |
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| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
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| Q |
311 |
cttgttcttccacctagcccttcgattctggaaccatactgcaact |
356 |
Q |
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| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaact |
7461159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 7461545 - 7461445
Alignment:
| Q |
11 |
cagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaatataatattgttgg |
110 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7461545 |
cagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatataatattgttgg |
7461446 |
T |
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| Q |
111 |
a |
111 |
Q |
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| T |
7461445 |
a |
7461445 |
T |
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