View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12849_low_1 (Length: 271)

Name: NF12849_low_1
Description: NF12849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12849_low_1
NF12849_low_1
[»] chr5 (25 HSPs)
chr5 (7-145)||(31643358-31643499)
chr5 (144-261)||(31643884-31644001)
chr5 (153-261)||(40843336-40843444)
chr5 (153-261)||(31475954-31476062)
chr5 (144-253)||(31279489-31279598)
chr5 (153-253)||(31284695-31284795)
chr5 (171-261)||(31368542-31368632)
chr5 (144-253)||(31288464-31288573)
chr5 (156-261)||(31317328-31317433)
chr5 (156-261)||(31332169-31332274)
chr5 (144-253)||(31407417-31407526)
chr5 (153-261)||(31378676-31378784)
chr5 (144-247)||(31281417-31281520)
chr5 (172-261)||(31313216-31313305)
chr5 (156-261)||(31380954-31381059)
chr5 (153-261)||(31329894-31330002)
chr5 (172-261)||(31362969-31363058)
chr5 (173-261)||(31395729-31395817)
chr5 (64-114)||(31643460-31643510)
chr5 (174-255)||(31387834-31387915)
chr5 (173-261)||(31390862-31390950)
chr5 (155-208)||(31416561-31416614)
chr5 (186-255)||(31483653-31483722)
chr5 (155-208)||(31494138-31494191)
chr5 (152-208)||(31463031-31463087)
[»] chr3 (1 HSPs)
chr3 (174-256)||(25708412-25708494)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 31643358 - 31643499
Alignment:
Q  7 actactaccaatgtcggtactagccaactgcgatgaaggtgaatggaagtcaata---gttacggaatcttcatccgggagactagtagtatgttcgtca 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |    
T  31643358 actactaccaatgtcggtactagccaactgtgatgaaggtgaatggaagtcaataatagttacggaatcttcatccgggagactagtagtatgttcgtta 31643457  T
Q  104 tctacgaaatcttcatccgagagactattagtatgttcgtta 145  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  31643458 tctacgaaatcttcatccgagagactagtagtatgttcgtta 31643499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 31643884 - 31644001
Alignment:
Q  144 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 243  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||    
T  31643884 taaaggaaaatcttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaagccca 31643983  T
Q  244 caaatctccatacctttg 261  Q
    ||||||||||||||||||    
T  31643984 caaatctccatacctttg 31644001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 40843336 - 40843444
Alignment:
Q  153 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 252  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||| |||||||| || |  |||||||||  |  ||||||||| |||||||||||||    
T  40843336 atcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacagcagctgaagcaaatcccacaaatctcc 40843435  T
Q  253 atacctttg 261  Q
    |||||||||    
T  40843436 atacctttg 40843444  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 31475954 - 31476062
Alignment:
Q  153 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 252  Q
    |||||||||| || ||| | ||||||||||||||| ||||||||||| |||||||| || || |||||||||  |  ||||||||| |||||||||||||    
T  31475954 atcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacagcagctgaagcaaagcccacaaatctcc 31476053  T
Q  253 atacctttg 261  Q
    |||||||||    
T  31476054 atacctttg 31476062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 31279489 - 31279598
Alignment:
Q  144 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 243  Q
    ||||||||||||||||| | || ||| |||||||| |||||||||||||||||||| |||||||| || |  |||||||||| |  ||||||||| || |    
T  31279489 taaaggaaaatcttcaagaaattccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaagccta 31279588  T
Q  244 caaatctcca 253  Q
    ||||||||||    
T  31279589 caaatctcca 31279598  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 31284795 - 31284695
Alignment:
Q  153 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 252  Q
    ||||||| ||||| ||| |||||||| |||||||||||||||||||| |||||||| || || ||||||| |  | |||||||||| |||||||||||||    
T  31284795 atcttcagcagattccagtctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaatctcc 31284696  T
Q  253 a 253  Q
    |    
T  31284695 a 31284695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 31368632 - 31368542
Alignment:
Q  171 tctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttg 261  Q
    |||||||| |||||||| ||||||||||| | ||||||||| |  |||||||||| | |||||||||| |||||||||||||| |||||||    
T  31368632 tctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttg 31368542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 31288573 - 31288464
Alignment:
Q  144 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 243  Q
    |||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||  ||| ||||  |||| |||||||||| |  ||||||||| || |    
T  31288573 taaaggaaaatcttcaacagattccagtctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaagccta 31288474  T
Q  244 caaatctcca 253  Q
    ||||||||||    
T  31288473 caaatctcca 31288464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 31317433 - 31317328
Alignment:
Q  156 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 255  Q
    ||||||| || ||| |||||||| |||||||| ||||||||||| |  |||||||| |  |||||||||| | |||||||||| |||||||||||||| |    
T  31317433 ttcaacaaattccattctccaaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccaca 31317334  T
Q  256 cctttg 261  Q
    ||||||    
T  31317333 cctttg 31317328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 31332274 - 31332169
Alignment:
Q  156 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 255  Q
    ||||||| || ||| |||||||| || ||||||||||||||||| | |||||| || || |||||||||| | |||||||||| || ||||||||||| |    
T  31332274 ttcaacaaattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccaca 31332175  T
Q  256 cctttg 261  Q
    ||||||    
T  31332174 cctttg 31332169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 31407417 - 31407526
Alignment:
Q  144 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 243  Q
    ||||| || |||||||||| || ||||| ||||||||||| ||||||||||| ||| |||||||| ||||| | |||||||  |  ||||||||| ||||    
T  31407417 taaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaacagcagctgaagcaaagccca 31407516  T
Q  244 caaatctcca 253  Q
    ||||||||||    
T  31407517 caaatctcca 31407526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 31378784 - 31378676
Alignment:
Q  153 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 252  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || |||||||||| |  || |||||| |||| ||||||||    
T  31378784 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctcc 31378685  T
Q  253 atacctttg 261  Q
    | |||||||    
T  31378684 acacctttg 31378676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 31281520 - 31281417
Alignment:
Q  144 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaacccca 243  Q
    ||||||||||||||||||| || |||||||||||| ||||| |||||||||||||| | |||||| || || ||||||| || |  ||||||||| || |    
T  31281520 taaaggaaaatcttcaacaaattccaatctccaaagagataattgaaggaagagcttaaagcataacaaagaagtccaagaacagctgaagcaaagccta 31281421  T
Q  244 caaa 247  Q
    ||||    
T  31281420 caaa 31281417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 31313305 - 31313216
Alignment:
Q  172 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttg 261  Q
    ||||||||||||||||||||||||| || ||||||| |||||| |||||| ||| |   | |||||| |||||||||||||| |||||||    
T  31313305 ctccaaatagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttg 31313216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 31381059 - 31380954
Alignment:
Q  156 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 255  Q
    ||||||| || ||| |||||||| || || |||||||||||||| | |||||| || || |||||||||| | |||||||||| || ||||||||||| |    
T  31381059 ttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccaca 31380960  T
Q  256 cctttg 261  Q
    ||||||    
T  31380959 cctttg 31380954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 31330002 - 31329894
Alignment:
Q  153 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctcc 252  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || |||||||||| |  || || ||| |||| ||||||||    
T  31330002 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagaaaatcccagaaatctcc 31329903  T
Q  253 atacctttg 261  Q
    | |||||||    
T  31329902 acacctttg 31329894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 31363058 - 31362969
Alignment:
Q  172 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttg 261  Q
    ||||||| ||||||||||||||||| || ||||||| |||||| |||||| ||| |   | |||||| |||||||||||||| |||||||    
T  31363058 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttg 31362969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 31395817 - 31395729
Alignment:
Q  173 tccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttg 261  Q
    |||||||||||  |||||||||||||| |||||||| || |  |||||||||| |  ||||||| | || |||||||||||||||||||    
T  31395817 tccaaatagatgattgaaggaagagctgagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttg 31395729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 31643460 - 31643510
Alignment:
Q  64 tacggaatcttcatccgggagactagtagtatgttcgtcatctacgaaatc 114  Q
    |||| |||||||||||| |||||||||||||||||||| || |||||||||    
T  31643460 tacgaaatcttcatccgagagactagtagtatgttcgttatgtacgaaatc 31643510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 31387834 - 31387915
Alignment:
Q  174 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 255  Q
    ||||||||||   |||||||||||||||||||||| || || |||||||||| | ||||| ||||   ||||||||||||||    
T  31387834 ccaaatagatgagtgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccata 31387915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 31390862 - 31390950
Alignment:
Q  173 tccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatacctttg 261  Q
    ||||||||||| |||||||||||| || |||||||| ||||| |  |||| || | |||| | ||| | ||||||||||||||||||||    
T  31390862 tccaaatagatggttgaaggaagaacttagagcataacagaggaagccaataaaagatgatgtaaaactcacaaatctccatacctttg 31390950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 31416561 - 31416614
Alignment:
Q  155 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 208  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31416561 cttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcata 31416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 31483722 - 31483653
Alignment:
Q  186 ttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccata 255  Q
    |||||||||||||| ||||| ||  |||||||||||| |||  ||||| |||| | ||||||||||||||    
T  31483722 ttgaaggaagagcttagagcgtaaaagagtagtccaataatggatgaaacaaaacacacaaatctccata 31483653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 31494138 - 31494191
Alignment:
Q  155 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 208  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31494138 cttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcata 31494191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 31463031 - 31463087
Alignment:
Q  152 aatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 208  Q
    |||||||||||  | ||||| ||||||||||| ||||||||||||||| | ||||||    
T  31463031 aatcttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcata 31463087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 25708494 - 25708412
Alignment:
Q  174 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaaccccacaaatctccatac 256  Q
    ||||| ||||| || || |||||||| |||||||| |||| |||||||||||||  ||||||||| || ||||||||||||||    
T  25708494 ccaaacagataattaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatctccatac 25708412  T

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