View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12849_low_2 (Length: 235)

Name: NF12849_low_2
Description: NF12849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12849_low_2
NF12849_low_2
[»] chr5 (5 HSPs)
chr5 (1-221)||(40180487-40180707)
chr5 (56-161)||(38605052-38605157)
chr5 (73-161)||(40181262-40181350)
chr5 (73-161)||(38605743-38605831)
chr5 (73-152)||(41885913-41885992)
[»] chr6 (2 HSPs)
chr6 (83-161)||(410918-410996)
chr6 (82-143)||(9161362-9161423)
[»] chr8 (5 HSPs)
chr8 (82-161)||(44459581-44459660)
chr8 (82-161)||(44467114-44467193)
chr8 (93-161)||(34502314-34502382)
chr8 (93-161)||(44460294-44460362)
chr8 (93-161)||(44467827-44467895)
[»] chr1 (1 HSPs)
chr1 (93-161)||(46359164-46359232)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40180707 - 40180487
Alignment:
Q  1 gtttctttagatatatggggggaggtaggaggatagtaggaggttacagtttctatggatatatttgggacaaagggaaggctgcacttgatgtttttca 100  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40180707 gtttctttagatatatggggaaaggtaggatgatagtaggaggttacagtttctatggatatatttgggacaaagggaaggctgcacttgatgtttttca 40180608  T
Q  101 taaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagctatctgtgacatagattacagtactgatgtactccagcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  40180607 taaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagctatttgtggcatagattacagtactgatgtactccagcaa 40180508  T
Q  201 gctgcttccatatgtcaaaag 221  Q
    || ||||||||||||||||||    
T  40180507 gccgcttccatatgtcaaaag 40180487  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 38605157 - 38605052
Alignment:
Q  56 tggatatatttgggacaaagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactg 155  Q
    ||||||| | |||||| |||| ||| |||||||  | |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  38605157 tggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactg 38605058  T
Q  156 caagct 161  Q
     |||||    
T  38605057 gaagct 38605052  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 40181350 - 40181262
Alignment:
Q  73 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||| ||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||  || |||||||||||||    
T  40181350 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagct 40181262  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 38605831 - 38605743
Alignment:
Q  73 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||| ||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  38605831 aaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagct 38605743  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 41885913 - 41885992
Alignment:
Q  73 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttaca 152  Q
    ||||||| |||||||  ||||||||||||||||||||||  |||||||||| |||||||||||||||||||  |||||||    
T  41885913 aagggaaagctgcacacgatgtttttcataaatttgaggcttttcaatgtgagccaaatcaagatacatattactttaca 41885992  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 410918 - 410996
Alignment:
Q  83 tgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| || |||||    
T  410918 tgcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagct 410996  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 9161362 - 9161423
Alignment:
Q  82 ctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatat 143  Q
    |||||||||| ||||||||| |||||||||||||||||||||| || |||||||| ||||||    
T  9161362 ctgcacttgaagtttttcattaatttgaggtctttcaatgtgttccgaatcaagagacatat 9161423  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 44459581 - 44459660
Alignment:
Q  82 ctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||||||||| ||||||||||  ||||||| |||||| |||||||||||||| |||||||||  |||||| |||||||||    
T  44459581 ctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagct 44459660  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 44467114 - 44467193
Alignment:
Q  82 ctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||||||||| ||||||||||  ||||||| |||||| |||||||||||||| |||||||||  |||||| |||||||||    
T  44467114 ctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagct 44467193  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 34502382 - 34502314
Alignment:
Q  93 gtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||||||||||||||||||  |||||||||||||| |||| ||||||||| | |||||||||| |||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagct 34502314  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 44460294 - 44460362
Alignment:
Q  93 gtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||||||||||||  ||| |||||||||    
T  44460294 gtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagct 44460362  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 44467827 - 44467895
Alignment:
Q  93 gtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||||||||||||  ||| |||||||||    
T  44467827 gtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagct 44467895  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 46359164 - 46359232
Alignment:
Q  93 gtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 161  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||||||||||||  ||| |||||||||    
T  46359164 gtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagct 46359232  T

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