View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1284_high_5 (Length: 401)
Name: NF1284_high_5
Description: NF1284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1284_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 36 - 367
Target Start/End: Complemental strand, 10770384 - 10770053
Alignment:
| Q |
36 |
tggatagtggaacttatctttttgctatgtattataaacaatggcttaaagttagtggtgctagtgagcttcctcttccaattgttcccttgccatcaag |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10770384 |
tggatagtggaacttatctttttgctatgtattataaacaatggcttaaagttagtggtgctagtgagcttcctcttccaattgttcccttgccatcaag |
10770285 |
T |
|
| Q |
136 |
accaagttttaggtcatcaagaagaatgtcttcagattcttcaatttcaaattcttccattaatccaaatttgtaagtgaacaaccannnnnnnatgata |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10770284 |
accaagttttaggtcatcaagaagaatgtcttcagattcttcaatttcaaatacttccattaatccaaatttgtaagtgaacaaccatttttttatgata |
10770185 |
T |
|
| Q |
236 |
taaaaatatgtgtatatagtactccctctggaacgaaatataagcaaaataatatatttaccggacaagataaatgtacnnnnnnnccttaaatttcatt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
10770184 |
taaaaatatgtgtatatagtactccctctggaacgaaatataagcaaaagaatatatttaccggacaagatacatgtactttttttccttaaatttcatt |
10770085 |
T |
|
| Q |
336 |
attgagtgagcagttatattatgtgctttaaa |
367 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
10770084 |
attgagtgagtagttatattatgtgctttaaa |
10770053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University