View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1284_low_11 (Length: 363)
Name: NF1284_low_11
Description: NF1284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1284_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 34956190 - 34956012
Alignment:
| Q |
81 |
gagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagat |
180 |
Q |
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| T |
34956190 |
gagatgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagat |
34956091 |
T |
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| Q |
181 |
caaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctcttaaacc |
259 |
Q |
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| T |
34956090 |
caaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctctaaaacc |
34956012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 34974605 - 34974473
Alignment:
| Q |
128 |
caaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaact |
227 |
Q |
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| T |
34974605 |
caaatcaatttttttcttagcagcatgtttttgtcgcttcatcctcctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaact |
34974506 |
T |
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| Q |
228 |
ttgggttttggatttctcaaagctcttaaacct |
260 |
Q |
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| T |
34974505 |
ttgggttttggatttctcaaagttctaaaacct |
34974473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 35035308 - 35035207
Alignment:
| Q |
152 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
251 |
Q |
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|||||| ||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
35035308 |
atgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
35035209 |
T |
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| Q |
252 |
ct |
253 |
Q |
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|| |
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| T |
35035208 |
ct |
35035207 |
T |
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