View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1284_low_12 (Length: 350)
Name: NF1284_low_12
Description: NF1284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1284_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 109 - 340
Target Start/End: Complemental strand, 4655003 - 4654777
Alignment:
| Q |
109 |
atatatatatgtaagggcttgagtttgaacctgtacatcaacatttaaaatatgtgaacttcagccacttacgtttcttnnnnnnnnnnnntgtttagtt |
208 |
Q |
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| T |
4655003 |
atatatatatgtaagggcttgagtttgaacctgtacatcaacatttaaaa-atgtgaacttcagccac-catgttactt-acaaaaaaaaatgtttagtt |
4654907 |
T |
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| Q |
209 |
tgataaaattataatttttctttttagtcatagnnnnnnnnaaatatgtgtgaactgtgaaataaataaatatgtcactccaatattgtnnnnnnnnntg |
308 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4654906 |
tgataaaattataatttttc-ttttagtcatag-tttttctaaatatgtgtgaactgtgaaataaataaatatgtcactccaatattgtaaaaaaaaatg |
4654809 |
T |
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| Q |
309 |
aagtgcattagtattattatttccttcctatg |
340 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4654808 |
aagtgcattagtattattatttccttcctatg |
4654777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 4655412 - 4655350
Alignment:
| Q |
56 |
aatatattttctgtttagcatgtttgcatattttgggtttgatttgagtgttaatatatatat |
118 |
Q |
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| T |
4655412 |
aatatattttctgtttagcatgtttgcatattttgggtttgatttgagtgttaatatatatat |
4655350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 15028985 - 15028957
Alignment:
| Q |
149 |
acatttaaaatatgtgaacttcagccact |
177 |
Q |
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| T |
15028985 |
acatttaaaatatgtgaacttcagccact |
15028957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 47876621 - 47876568
Alignment:
| Q |
7 |
gaaagtactcttccttaactctagtttgagggaacctagatttgaggtcaatat |
60 |
Q |
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| T |
47876621 |
gaaagtactcttccttaactctagtttgagggaacctagatttgaggtcaatat |
47876568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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