View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1284_low_9 (Length: 385)

Name: NF1284_low_9
Description: NF1284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1284_low_9
NF1284_low_9
[»] chr3 (10 HSPs)
chr3 (1-363)||(2333348-2333710)
chr3 (20-375)||(34297454-34297808)
chr3 (3-80)||(17401009-17401086)
chr3 (259-349)||(43892076-43892166)
chr3 (297-371)||(52964153-52964227)
chr3 (297-371)||(54548330-54548404)
chr3 (289-349)||(4741615-4741675)
chr3 (293-365)||(29210867-29210939)
chr3 (259-349)||(47105849-47105939)
chr3 (297-371)||(20537702-20537776)
[»] chr2 (9 HSPs)
chr2 (1-370)||(14435856-14436225)
chr2 (157-375)||(30928091-30928298)
chr2 (37-183)||(30927946-30928088)
chr2 (282-371)||(36756959-36757048)
chr2 (288-349)||(10748045-10748106)
chr2 (288-349)||(37670734-37670795)
chr2 (297-358)||(42700143-42700204)
chr2 (298-349)||(14786012-14786063)
chr2 (259-370)||(16468366-16468477)
[»] chr4 (11 HSPs)
chr4 (20-363)||(55640896-55641236)
chr4 (20-363)||(42661259-42661597)
chr4 (289-371)||(54421412-54421494)
chr4 (298-371)||(43733915-43733988)
chr4 (297-349)||(21257050-21257102)
chr4 (297-361)||(38761397-38761461)
chr4 (288-349)||(42327927-42327988)
chr4 (288-371)||(32499541-32499624)
chr4 (288-371)||(3914758-3914841)
chr4 (297-363)||(5185491-5185557)
chr4 (289-349)||(1481027-1481087)
[»] chr8 (5 HSPs)
chr8 (297-371)||(5896315-5896389)
chr8 (297-361)||(16484167-16484231)
chr8 (288-349)||(11629495-11629556)
chr8 (288-349)||(9180755-9180816)
chr8 (288-349)||(34752714-34752775)
[»] chr7 (11 HSPs)
chr7 (224-365)||(5645219-5645360)
chr7 (290-365)||(31802462-31802537)
chr7 (288-365)||(513847-513924)
chr7 (297-372)||(27745732-27745807)
chr7 (304-372)||(18221471-18221539)
chr7 (288-371)||(41147749-41147832)
chr7 (312-371)||(43970061-43970120)
chr7 (300-358)||(36422696-36422754)
chr7 (288-358)||(41605363-41605433)
chr7 (288-365)||(12350745-12350822)
chr7 (259-324)||(43203527-43203592)
[»] chr1 (12 HSPs)
chr1 (297-361)||(27643382-27643446)
chr1 (288-371)||(33978185-33978268)
chr1 (297-371)||(28037649-28037723)
chr1 (288-349)||(39501120-39501181)
chr1 (286-349)||(38599020-38599083)
chr1 (293-371)||(7386664-7386742)
chr1 (259-349)||(23809444-23809534)
chr1 (299-347)||(15846206-15846254)
chr1 (299-347)||(15849590-15849638)
chr1 (259-349)||(44139697-44139787)
chr1 (288-349)||(14650988-14651049)
chr1 (288-349)||(14660779-14660840)
[»] scaffold0996 (1 HSPs)
scaffold0996 (288-371)||(1551-1634)
[»] chr5 (6 HSPs)
chr5 (288-358)||(13020936-13021006)
chr5 (288-349)||(13092469-13092530)
chr5 (288-371)||(23151264-23151347)
chr5 (297-371)||(28499180-28499254)
chr5 (271-348)||(7274511-7274588)
chr5 (310-371)||(10813148-10813209)
[»] chr6 (1 HSPs)
chr6 (288-349)||(10158979-10159040)
[»] scaffold0024 (1 HSPs)
scaffold0024 (290-349)||(69079-69138)
[»] scaffold0067 (1 HSPs)
scaffold0067 (288-371)||(10987-11070)
[»] scaffold0007 (1 HSPs)
scaffold0007 (288-350)||(188404-188466)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 2333348 - 2333710
Alignment:
Q  1 ttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctactg 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||  ||||||||||     
T  2333348 ttcaacaacaattccatggtagggtatggtatgtgctttcgagattcattggggcagcttttacttgaaaaatcagattacatgcaaaattctgctacta 2333447  T
Q  101 ttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttg 200  Q
    ||||| | |||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2333448 ttcttaaggtggaaaccattgggctgctagaagctatggagatggcaat--ctccaatggcatgcataatgttatatttgaaactgacagtagatccatg 2333545  T
Q  201 gtgaatacactctactctactactactcccctaaataattttggagacc--ttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggt 298  Q
    | |||| |||||||||||||||| |||||||| ||| | ||||||||||  ||||||||||||||||||| ||||||||||||||||| |||||| || |    
T  2333546 gagaatgcactctactctactaccactcccctcaatgaatttggagaccttttgtgattcaatgtaaaaacatcttgttaagtaatcacgactttatgat 2333645  T
Q  299 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatc 363  Q
    || |||||||||||||||||||||||||||||| |||||||||| ||| ||  ||||||||||||    
T  2333646 gttgtttgttaggaggcaagtaaataaggttgcacatagtattgttagtgctaccttatctcatc 2333710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 34297808 - 34297454
Alignment:
Q  20 tagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctactgttcttgaagtggaaaccat 119  Q
    |||| ||||| ||||||||| |||||||| |  |  || ||||||||| ||||| | ||||| ||||| |||| ||||||||||||||||||||||||||    
T  34297808 taggatatggtatgtgctttagagattcactaagacagtttttacttggaaaatcatattacttgcaaatttccgctactgttcttgaagtggaaaccat 34297709  T
Q  120 tgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactcta 219  Q
    |||   ||||||||  |||||||||||| |   | |||||| |||||| ||||||| |||||||||||||||||||| || |||||| |||||||| |||    
T  34297708 tggatggctagaagaaatgaagatggcagtt--ttcaatggtatgcatgatgttatctttgaaactgacagtagatctttagtgaatgcactctacacta 34297611  T
Q  220 ctactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagt 319  Q
    ||||||||| ||| ||| | |||| |||| |||||||||  ||||||||||| |||| ||||||||| |||||| || ||||||||||||||||||||||    
T  34297610 ctactactctcctcaatgaatttgaagactttgtgattcggtgtaaaaatattttgtcaagtaatcacgactttatgatgtcgtttgttaggaggcaagt 34297511  T
Q  320 aaataagg-ttgctcatagtattgctagagccgccttatctcatcctcgcccctttg 375  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||| || ||||||||    
T  34297510 aaataaggtttgctcatattattgttagagccgccttatctcatcttcacccctttg 34297454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 17401086 - 17401009
Alignment:
Q  3 caacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagatta 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||| ||||| ||||||    
T  17401086 caacaacaattccatggtagggtatggtatgtgcttccgagattcattcgggcagcttttacttgtaaaatcagatta 17401009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 43892076 - 43892166
Alignment:
Q  259 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||||||| |||||  || |||||||  |||||||||||    
T  43892076 aatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgctagagc 43892166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 52964227 - 52964153
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||| |||||| |  |||||||||||||| |||||    
T  52964227 gtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccc 52964153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 54548404 - 54548330
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    ||||||| | ||||||||||||| ||||  |||||||||||||| ||||||||  |||||||||||||| |||||    
T  54548404 gtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccc 54548330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 4741675 - 4741615
Alignment:
Q  289 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    ||||||| ||||||| |||||||||||| |  ||||| |||||||||||||||||||||||    
T  4741675 actttgttgtgtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagc 4741615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 29210939 - 29210867
Alignment:
Q  293 tgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 365  Q
    |||||||||||||||| ||||||||| |||||| ||  ||||||| |||||||||||| | |||||| |||||    
T  29210939 tgtggtgtcgtttgttcggaggcaagcaaataaagtaactcatagcattgctagagcctctttatctaatcct 29210867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 47105849 - 47105939
Alignment:
Q  259 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    ||||||||| | |||||||||||||||  |||| ||| ||||||||||| |||||||||  |||||| || |||||||  ||||| |||||    
T  47105849 aatgtaaaactctcttgttaagtaatcccgactatgtagtgtcgtttgtgaggaggcaaacaaataatgtggctcataacattgcaagagc 47105939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 20537702 - 20537776
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||||||| ||||||||| ||||||||| |||||||  || |||||||  |||||||| || ||| |||||    
T  20537702 gtgtcgtttgtttggaggcaagcaaataaggtagctcataagatagctagagttgccttatcacaccctagcccc 20537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 14436225 - 14435856
Alignment:
Q  1 ttcaacaacaattccatggtagggtat--ggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctac 98  Q
    |||||||||||||||||||||| ||||  || |||||||||||||||||||| ||| |  ||||||||| ||||| | ||||| ||||| ||||||||||    
T  14436225 ttcaacaacaattccatggtagtgtatatggtatgtgctttcgagattcattggggcaaattttacttggaaaatcatattacttgcaaatttctgctac 14436126  T
Q  99 tgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatcct 198  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||||  |||||||||  |||||||||||||||||||||||||| |||||||||    
T  14436125 tgttcttgaagtggaaaccattgggttgctagaagctatgaagatgacaat--ctccaatggtgtgcataatgttatatttgaaactgacggtagatcct 14436028  T
Q  199 tggtgaatacactctactctactactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggt 298  Q
    |||||||| |||| |||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||    
T  14436027 tggtgaatgcactttactctactactactcccctcaatgaatttggagaccttgtggttcaatgtaaaaatatcttgttaagtaatcacaactttatggt 14435928  T
Q  299 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgccc 370  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14435927 gtcgtttgttatgaggtatgtaaataaggttgctcatagtattgctagagccgccttatctcctcctcgccc 14435856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 157 - 375
Target Start/End: Original strand, 30928091 - 30928298
Alignment:
Q  157 atggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactactactcccctaaataattttggagaccttgtgat 256  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||    
T  30928091 atggcatgcataatgttatatttgaaactgaaagtagatccttggtgaatacactctagtctactactactcccctcaatgaatttggagatcttgtgat 30928190  T
Q  257 tcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgcctta 356  Q
    ||||||||||||||||||           | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30928191 tcaatgtaaaaatatctt-----------acgactttgtggcgtcgtttgttaggaggcaaataaataaggttgctcatagtattgctagagccgcctta 30928279  T
Q  357 tctcatcctcgcccctttg 375  Q
    |||||||||||||||||||    
T  30928280 tctcatcctcgcccctttg 30928298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 30927946 - 30928088
Alignment:
Q  37 tttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctactgttcttgaagtggaaaccattgggcagctagaagcta 136  Q
    |||||||||||||| ||| |||||||||||| ||||| | ||||||||||||||||||||||  |||||||||||||||| ||||||| |||||||||||    
T  30927946 tttcgagattcattagggcagcttttacttggaaaatcatattacatgcaattttctgctac--ttcttgaagtggaaactattgggctgctagaagcta 30928043  T
Q  137 tgaagatggcaataactccaatggcatgcataatgttatatttgaaa 183  Q
    |||||||||||||  |||||||||||||||||||||| | |||||||    
T  30928044 tgaagatggcaat--ctccaatggcatgcataatgttttttttgaaa 30928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 36757048 - 36756959
Alignment:
Q  282 aatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||||||||| ||||||||| || |||||||||  ||||| |||||||||||||||||||||||  ||||||| |||||| |||||    
T  36757048 aatcatgactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccc 36756959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 10748045 - 10748106
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  10748045 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10748106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 37670795 - 37670734
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||| ||||||  |||||| |||| ||||||||||||||||||    
T  37670795 gactttgttgtgtcgtatgttagaaggcaaacaaataaagttgttcatagtattgctagagc 37670734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 42700204 - 42700143
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 358  Q
    ||||||||||||| |||||||  ||||| ||| |||||||||||||||||||| | ||||||    
T  42700204 gtgtcgtttgttatgaggcaaacaaatagggtagctcatagtattgctagagcggtcttatc 42700143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 14786012 - 14786063
Alignment:
Q  298 tgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||| |||||||||||||| ||||   |||||||||||||||||||||||    
T  14786012 tgtcgtatgttaggaggcaagcaaatggtgttgctcatagtattgctagagc 14786063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 370
Target Start/End: Complemental strand, 16468477 - 16468366
Alignment:
Q  259 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 358  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||| ||| ||| |  || |||||||  ||||||||||| ||  ||||    
T  16468477 aatgtaaaattctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcataacattgctagagctgctctatc 16468378  T
Q  359 tcatcctcgccc 370  Q
    | ||||| ||||    
T  16468377 taatcctagccc 16468366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 55640896 - 55641236
Alignment:
Q  20 tagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctactgttcttgaagtggaaaccat 119  Q
    |||||||||| ||||||||| |||||||| | ||| | ||||||||||  |||| ||||||| ||| | |||| |||| |||||||||||||| ||||||    
T  55640896 tagggtatggtatgtgctttagagattcactggggcaacttttacttggtaaatcagattacttgcgaatttccgctattgttcttgaagtgggaaccat 55640995  T
Q  120 tgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactcta 219  Q
    |||   ||||||||||||||||||||||||   | |||||| |||||| | |||||||||||||| |||| |||||| || |  ||| |||| ||| |||    
T  55640996 tggattgctagaagctatgaagatggcaat--tttcaatggtatgcatgaagttatatttgaaacggacaatagatctttagaaaatgcactatacacta 55641093  T
Q  220 ctactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagt 319  Q
    ||| ||||||| | ||| | |||  | ||||||||||||||||||||||||||  ||||| ||||||  | ||| ||||| ||||| |||  |  |||||    
T  55641094 ctaatactcccttcaatgaatttaaaaaccttgtgattcaatgtaaaaatatc--gttaactaatcacaattttatggtgccgttttttaacatacaagt 55641191  T
Q  320 aaataaggttg-ctcatagtattgctagagccgccttatctcatc 363  Q
    |||||||||||  ||||| |||||||||||| |||||||||||||    
T  55641192 aaataaggttgtttcataatattgctagagctgccttatctcatc 55641236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 42661259 - 42661597
Alignment:
Q  20 tagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgc-aattttctgctactgttcttgaagtggaaacca 118  Q
    |||||||||| ||||||||| |||||||||| ||| |  |||||||||  |||| | ||||| ||| ||||||| |||| ||||||||||||||||||||    
T  42661259 tagggtatggtatgtgctttagagattcattggggcaatttttacttggtaaatcaaattacttgcgaattttc-gctattgttcttgaagtggaaacca 42661357  T
Q  119 ttgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactct 218  Q
    ||||   |||||||||||| |||||||||||   | |||||| |||||| | |||||||||| ||| |||| |||||| || || ||| |||| ||| ||    
T  42661358 ttggattgctagaagctataaagatggcaat--tttcaatggtatgcatgaagttatatttg-aacggacactagatctttagtaaatgcactatacact 42661454  T
Q  219 actactactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaag 318  Q
    |||||||||||| | ||| | |||  | |||||||||||| |||||||||||||  | ||| ||||||  | ||||||||| ||||| |||  |  ||||    
T  42661455 actactactcccttcaatgaatttaaaaaccttgtgattccatgtaaaaatatc--gataactaatcacaattttgtggtgccgttttttaacatacaag 42661552  T
Q  319 taaataaggttgctcatagtattgctagagccgccttatctcatc 363  Q
    ||||||||||||||| || |||||||||||| |||||||||||||    
T  42661553 taaataaggttgctcgtaatattgctagagctgccttatctcatc 42661597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 371
Target Start/End: Complemental strand, 54421494 - 54421412
Alignment:
Q  289 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    ||||||| ||||||||| || |||||||||  |||||||||| ||||||||||||||||||  ||||||| |||||| |||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccc 54421412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 43733915 - 43733988
Alignment:
Q  298 tgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||| | | |||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||| |||||    
T  43733915 tgtcgtttatcaagaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccc 43733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 21257050 - 21257102
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  21257050 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagc 21257102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 38761461 - 38761397
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctca 361  Q
    ||||||||||||| || |||||  |||||||||||||||||||||||||||||  ||||||||||    
T  38761461 gtgtcgtttgttaagaagcaagctaataaggttgctcatagtattgctagagcatccttatctca 38761397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 42327988 - 42327927
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  42327988 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 42327927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 32499541 - 32499624
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  32499541 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 32499624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 3914758 - 3914841
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||| ||||||| |||| || ||||| |||||||||||||| ||| |||||| |||||  | |||| ||||||| |||||    
T  3914758 gactttgtagtgtcgtatgtttgggggcaaataaataaggttgcttataatattgccagagcttctttatgtcatcctagcccc 3914841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 5185557 - 5185491
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatc 363  Q
    ||||||| | ||||||| ||||  |||| ||||||||||||||| ||||||||  ||||||||||||    
T  5185557 gtgtcgtatattaggagacaagctaatagggttgctcatagtatagctagagcttccttatctcatc 5185491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 1481027 - 1481087
Alignment:
Q  289 actttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    ||||||| ||||||| || ||||||||||| |||||  ||| |||||||||||| ||||||    
T  1481027 actttgtagtgtcgtatgataggaggcaagcaaatagagttactcatagtattgttagagc 1481087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 5896389 - 5896315
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||||||||||||||||| |||||  || |||||||||||||||||||| ||||||||||||||| |||||    
T  5896389 gtgtcgtttgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccc 5896315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 16484231 - 16484167
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctca 361  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||  ||||||||||    
T  16484231 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctca 16484167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 11629495 - 11629556
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||||||||||||||||    
T  11629495 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagc 11629556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 9180816 - 9180755
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  9180816 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 9180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 34752775 - 34752714
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||||||||||| |||||   ||||||||||||||||||||||    
T  34752775 gactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctcatagtattgctagagc 34752714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 365
Target Start/End: Original strand, 5645219 - 5645360
Alignment:
Q  224 tactcccctaaataattttggagaccttgtgattcaatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaat 323  Q
    |||||| || ||||| ||||| ||||||||| |||||||||||    | ||||||||||| |  || ||||| |||||||||||| | ||| ||| ||||    
T  5645219 tactcctcttaataaatttggggaccttgtgcttcaatgtaaatcattattgttaagtaaccccgattttgtcgtgtcgtttgttcgaaggtaagcaaat 5645318  T
Q  324 aaggttgctcatagtattgctagagccgccttatctcatcct 365  Q
    ||| ||||||||||||||  |||||| | |||||||||||||    
T  5645319 aagattgctcatagtattattagagctgtcttatctcatcct 5645360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 31802462 - 31802537
Alignment:
Q  290 ctttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 365  Q
    |||||| ||||||| |||| |||||||||  |||||||||||||||||||||||||||||  |||||| |||||||    
T  31802462 ctttgtagtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatcct 31802537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 513847 - 513924
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 365  Q
    |||||||| ||||||| |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| |||||||    
T  513847 gactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcct 513924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 27745807 - 27745732
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccct 372  Q
    ||||||||||||| |||| |||  |||||||||||||||||||| ||||||||  |||||||||| ||| ||||||    
T  27745807 gtgtcgtttgttaagaggtaagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagcccct 27745732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 18221539 - 18221471
Alignment:
Q  304 ttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccct 372  Q
    |||||| ||||||||  |||||||||||||||| ||||||||||||  |||||||||| ||| ||||||    
T  18221539 ttgttaagaggcaagctaataaggttgctcatactattgctagagcatccttatctcaccctagcccct 18221471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 41147749 - 41147832
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  41147749 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 41147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 43970061 - 43970120
Alignment:
Q  312 aggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||  ||||| |||||    
T  43970061 aggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccc 43970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 36422696 - 36422754
Alignment:
Q  300 tcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 358  Q
    ||||||||| ||||||||||||||||||| | |||| ||||| ||||||||| ||||||    
T  36422696 tcgtttgtttggaggcaagtaaataaggtagatcatggtatttctagagccgtcttatc 36422754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 41605363 - 41605433
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 358  Q
    |||||||| ||||||| ||||  |||| | | ||||||||||||||||||||||||||||||  |||||||    
T  41605363 gactttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatc 41605433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 12350822 - 12350745
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcct 365  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  |||||||||||    
T  12350822 gactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcatagtattgctcgagcttcgctatctcatcct 12350745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 43203592 - 43203527
Alignment:
Q  259 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaata 324  Q
    ||||||||| | ||||||||||||| |  |||| ||| |||||||||||||||||||||| |||||    
T  43203592 aatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaata 43203527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 27643446 - 27643382
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctca 361  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||  ||||||||||    
T  27643446 gtgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctca 27643382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 33978268 - 33978185
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||| ||||| | |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| ||||||| |||||    
T  33978268 gactttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccc 33978185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 28037649 - 28037723
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||| ||||||||  | |||||||||||| |||||    
T  28037649 gtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccc 28037723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 39501120 - 39501181
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||| ||||||||||||||||    
T  39501120 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgcttatagtattgctagagc 39501181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 38599020 - 38599083
Alignment:
Q  286 atgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||||  ||||| | ||||||||||||||  ||||| |||||||||||||||||||||||    
T  38599020 atgactttgatgtgtcatatgttaggaggcaagataataaagttgctcatagtattgctagagc 38599083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 371
Target Start/End: Original strand, 7386664 - 7386742
Alignment:
Q  293 tgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||| |||||||||  |||||||| |||||| || |||||||| |||||||||||| | |||||| ||||| |||||    
T  7386664 tgtggtatcgtttgttccgaggcaagcaaataaagtagctcatagcattgctagagcctctttatctaatcctagcccc 7386742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 23809444 - 23809534
Alignment:
Q  259 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    ||||||||| | ||||||||||||||   |||| ||| |||||||||||||||||||||| |||||  || |||||||  ||||| |||||    
T  23809444 aatgtaaaactctcttgttaagtaattccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgcaagagc 23809534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 15846254 - 15846206
Alignment:
Q  299 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctaga 347  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||    
T  15846254 gtcgtttgttaagaggcaagttaacaaggtttctcatagtattgctaga 15846206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 15849638 - 15849590
Alignment:
Q  299 gtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctaga 347  Q
    ||||||||||| ||||||||| || |||||| |||||||||||||||||    
T  15849638 gtcgtttgttaagaggcaagttaacaaggtttctcatagtattgctaga 15849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 44139697 - 44139787
Alignment:
Q  259 aatgtaaaaatatcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    ||||||||| | ||||||||| |||||  |||| | | |||||||||||||||||||||| |||||  || |||||||  ||||| |||||    
T  44139697 aatgtaaaactctcttgttaaataatcccgactatatagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgcaagagc 44139787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 14650988 - 14651049
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||||  || ||||||||| |||||||||||| ||||| || ||||||||    
T  14650988 gactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagc 14651049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 14660779 - 14660840
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||||  || ||||||||| |||||||||||| ||||| || ||||||||    
T  14660779 gactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagc 14660840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 1634 - 1551
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||| ||||||| |||| |||||||||  |||| ||||||||||||||||||||||||  |||||| ||||||| |||||    
T  1634 gactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccc 1551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 13021006 - 13020936
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatc 358  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||  |||||||    
T  13021006 gactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatc 13020936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 13092530 - 13092469
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  13092530 gactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagc 13092469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 23151264 - 23151347
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||  ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  23151264 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 23151347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 28499180 - 28499254
Alignment:
Q  297 gtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    ||||||| |||||||||||||| |||||  |||||||||||||||||| ||||  |  ||||||||||| |||||    
T  28499180 gtgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccc 28499254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 7274511 - 7274588
Alignment:
Q  271 tcttgttaagtaatcatgactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagag 348  Q
    |||||||||||||||  |||| ||| ||||||||| |||||||||||| |||||  || ||||||| |||||| ||||    
T  7274511 tcttgttaagtaatcccgactatgtagtgtcgtttattaggaggcaagaaaatagtgtggctcataatattgcgagag 7274588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 10813209 - 10813148
Alignment:
Q  310 ggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||||  |||| ||||||||||||||| ||||||||  |||||||||||||| |||||    
T  10813209 ggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccc 10813148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 10159040 - 10158979
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||||| ||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  10159040 gactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcataatattgctagagc 10158979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 69138 - 69079
Alignment:
Q  290 ctttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagc 349  Q
    |||||| ||||||| ||||||||| |||| |||||| |||||||||||||| ||||||||    
T  69138 ctttgttgtgtcgtgtgttaggagacaagcaaataaagttgctcatagtatcgctagagc 69079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 11070 - 10987
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagccgccttatctcatcctcgcccc 371  Q
    |||||||  ||||||| |||||||||||||| |||||  ||||||| |||||||||| ||||  |  ||||||||||| |||||    
T  11070 gactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcgtagtattgctcgagcttcgctatctcatcctagcccc 10987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 188466 - 188404
Alignment:
Q  288 gactttgtggtgtcgtttgttaggaggcaagtaaataaggttgctcatagtattgctagagcc 350  Q
    |||||||| || |||| | ||||||| ||||||||||  |||||||||| |||||||||||||    
T  188466 gactttgtagtatcgtatattaggagacaagtaaatagagttgctcataatattgctagagcc 188404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University