View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-1 (Length: 568)
Name: NF1285-Insertion-1
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 316 - 566
Target Start/End: Complemental strand, 4946434 - 4946190
Alignment:
| Q |
316 |
ttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttatatagagtcacaatacacgcataatactcgggtgatgacttaaattat |
415 |
Q |
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| T |
4946434 |
ttaatattccaaattgttgtaagatgagaaataaagagatgtaagtgatttata--gagtcacaatacacgcataatactcgggtgatgacttaaattat |
4946337 |
T |
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| Q |
416 |
acacgtgtgaaatggattaatattgtttataatgtggctgatcccttttcactcgttaaatttagtcaaactatgggttctatggtcatcttatannnnn |
515 |
Q |
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| T |
4946336 |
acacgtgtgaaatggattaatattgtttataatgcggctgatcccttttcactcgttaaatttagtcaaactatgggttctatagtcatcttata----c |
4946241 |
T |
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| Q |
516 |
nnnnnnnttgcaacatcattttagcacgtccttttgagaatttaagcttta |
566 |
Q |
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| T |
4946240 |
tctctctttgcaacatcattttagcacgtccttttgagaatttaagcttta |
4946190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 4946749 - 4946490
Alignment:
| Q |
8 |
atgattacttaagagtttaagaattttaagataggtgatctttgacagtagtatgcttacaagttcaggcacatagataggggacataatttgcatcatc |
107 |
Q |
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| T |
4946749 |
atgattacttaagagtttaagaattttaagataggcgatctttgacagtagtatgcttacaagttcaggcacatagataggggacataatttgcatcatc |
4946650 |
T |
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| Q |
108 |
ttcagtttctttcctaaaaattcgattcgatttgatgtggtatgcactgaaaaagtg--------aagagnnnnnnnnttaatcagttgaaatctaacat |
199 |
Q |
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| T |
4946649 |
ttcagtttctttcctaaaaattcgattcgatttgatgtggtatgcactggaaaagtgaaaaaaaaaagaaaaacaaaattaaacagttgaaatctaacat |
4946550 |
T |
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| Q |
200 |
gttagaagaccaaagaaaaccctaaaagaaaaagcagattaagagttaaataggatacct |
259 |
Q |
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| T |
4946549 |
gttagaagacgaaagaaaaccctaaaagaaaaagcagattaagagttaaataggatacct |
4946490 |
T |
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