View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-11 (Length: 672)
Name: NF1285-Insertion-11
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 5 - 350
Target Start/End: Original strand, 40831532 - 40831871
Alignment:
| Q |
5 |
acataagaaacgtgttttctgcatatacaattgtgttcttaatattatcatatagtaatacccagctctaaggtgaaatacatatgttgttatcggtaga |
104 |
Q |
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| T |
40831532 |
acataagaaacgtgttttctgcatatacaattgtgttcttaatattatcatatagtaatacccagctctaaggtgaaatacatatgttgttatcggtgga |
40831631 |
T |
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| Q |
105 |
aataataaaagttaggttacaacctttaagttattttatgggcataagttagcannnnnnnnnnnnnnnattaccggcttgtttgtagcttaaccgttgt |
204 |
Q |
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| T |
40831632 |
aataataaaagttaggttacaa-ttttaagtta-cttaagggcataagttagca---ttttctttttttattaccggcttgtttgttgcttaaccgttgt |
40831726 |
T |
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| Q |
205 |
ctaattttaacttttcagtttcttctggcacgtcttgtgcttgaggaactccgttgtttttctttaatataatttcgcttagtttcgtnnnnnnnnttgt |
304 |
Q |
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| T |
40831727 |
caaattttaacttctcagtttcttctggcacgtcttgtgcttgaggaactccgttgtttttcattaatataatttcgcttagtttc-ttaaaaaaattgt |
40831825 |
T |
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| Q |
305 |
aaaattttatctgattctgattatttataaaattagtactgaattg |
350 |
Q |
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| T |
40831826 |
aaaattttatctgattctgattatttataaaattagtactgaattg |
40831871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 183 - 447
Target Start/End: Original strand, 40831869 - 40832135
Alignment:
| Q |
183 |
ttgtttgtagcttaaccgttgtctaattttaacttttcagttt-cttctggcacgtcttgtgcttgaggaactccgttgtttttctttaatataatttcg |
281 |
Q |
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| T |
40831869 |
ttgtttgtggcttaaccgttgtctaattttaacttttcagttttcttctaccatgtcttgagcttgaggaactctgttgtttttctttaatataatttcg |
40831968 |
T |
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| Q |
282 |
cttagtttcgtnnnnnnnn-ttgtaaaattttatctgattctgattatttataaaattagtactgaattgatataaaatgataaaatggtaaaaggaagt |
380 |
Q |
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| T |
40831969 |
cttagtttcttaaaaaaaaattgtaaaattttatctgattctgattatttataaaattagtactgaattgatataaaatgataaaatggtaaaaggaagt |
40832068 |
T |
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| Q |
381 |
ttaaatcaaggtaatattgacagaaaaaagtattacaccaaatatttgttatgcttaatttttaaaa |
447 |
Q |
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| T |
40832069 |
ttaaatcaaggtaatattgacagaaaaaagtattacaccaaatatttgttatgcttaatttttaaaa |
40832135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 483 - 672
Target Start/End: Original strand, 40832544 - 40832733
Alignment:
| Q |
483 |
ggtaaatcaggatttggagaacttagtaatgccaatgacgaatggatgacatatggggtcagatttatgtgatatcctcaactaaatttgcatcctgaat |
582 |
Q |
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| T |
40832544 |
ggtaaatcaggatttggagaacttagtaatgccaatgacgaatggaagacatatggggtcagatttatgtgatatcctcaactaaatttgcatcctgaat |
40832643 |
T |
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| Q |
583 |
tgttggctattgcaaatgtgcttgaaattttgtaagatttagagatgctggttctgaattagattctaagaatgatttgactttaactag |
672 |
Q |
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| T |
40832644 |
tgttggctattgcaaatgtgcttgaaattttgtaagatttagagatgctggttctgaattagattctaagaatgatttgactttaactag |
40832733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 480
Target Start/End: Original strand, 40832471 - 40832513
Alignment:
| Q |
438 |
atttttaaaataatatatgtatatgggagcttatttaggaatc |
480 |
Q |
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| T |
40832471 |
atttttaaaataatatatgtatatgggaccttatttaggaatc |
40832513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 1760649 - 1760541
Alignment:
| Q |
182 |
cttgtttgtagcttaaccgttgtctaattttaacttttcagtttcttctggcacgtcttgtgcttgaggaactccgttgtttttctttaatataatttcg |
281 |
Q |
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|||||||||||| |||| |||| ||||| |||||| | ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1760649 |
cttgtttgtagcctaactattgtgtaattataacttcttagttttttcaggcacgtcttgtgcttgaggaactctgttgtttttctttaatataatttcg |
1760550 |
T |
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| Q |
282 |
cttagtttc |
290 |
Q |
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| T |
1760549 |
attagtttc |
1760541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 16863007 - 16863081
Alignment:
| Q |
180 |
ggcttgtttgtagcttaaccgttgtctaattttaacttttcagtttcttctggcacgtcttgtgcttgaggaact |
254 |
Q |
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| T |
16863007 |
ggctagtttgtagccgaactgttgtgtaatattcacttttcagtttctcccgacacgtcttgtgcttgaggaact |
16863081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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