View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-12 (Length: 492)
Name: NF1285-Insertion-12
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-12 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 131 - 290
Target Start/End: Complemental strand, 40788252 - 40788093
Alignment:
| Q |
131 |
taagaagaacgagaataataaaaagaatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaaggttgttcttccaaaatcgtcaaa |
230 |
Q |
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| T |
40788252 |
taagaagaacgagaataataaaaataatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaaggttgttcttccaaaatcgtcaaa |
40788153 |
T |
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| Q |
231 |
ttcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
290 |
Q |
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| T |
40788152 |
ttcatccaaggtttcgaaggttgctactttttctctcattcctaaattatattcatcaac |
40788093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 40788033 - 40787892
Alignment:
| Q |
351 |
aactgaagcattgaaccttcttattgaaggcttcgaaaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
450 |
Q |
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| T |
40788033 |
aactgaagcattgaaccttcttattgaaggcttcgagaaacttgatattggtaatggcggaaagttaaccgtcaccggaaccgtcgatgctggaaaactc |
40787934 |
T |
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| Q |
451 |
agagataaccttgctattaaaacgaagaagaaagttgacttc |
492 |
Q |
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| T |
40787933 |
agagataaccttactattaaaacgaagaagaaagttgacttc |
40787892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 40788370 - 40788338
Alignment:
| Q |
7 |
acaccaagcaaaacaatgaaactcagaagaagc |
39 |
Q |
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| T |
40788370 |
acaccaagcaaaacaatgaaactcagaagaagc |
40788338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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