View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1285-Insertion-14 (Length: 547)
Name: NF1285-Insertion-14
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 474
Target Start/End: Complemental strand, 4358106 - 4357641
Alignment:
| Q |
12 |
tggggaaataaaattagagttaagattcaaatcaatcttaaaagttaaaccaacattacgttgaacctagtgaaatcggactcgaatttttaagcaatgg |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4358106 |
tggggaaataaaattagagtcaagattcaaatcaatcttaaaagttaaaccaacattacgttgaacctagtgaaatcggactcgaatttttaagcaatgg |
4358007 |
T |
|
| Q |
112 |
ctgacaannnnnnnn---gttgaaatagtggatgcgagggccggggagacctaactaaatgatagggaagacaaaatacatcaattagatcaattttcac |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4358006 |
ctgacaatttttttttttgttgaaatagtggatgcgagggctggggagacctaactaaatgatagggaagacaaaatacgtcaattagatcaattttcac |
4357907 |
T |
|
| Q |
209 |
ctttcgtgtcattaaccagtcaaaaaagaagtggatgggttaacttagtaggtgagttgaaactgccacacagagtccatctagtaacacgattgttcaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
4357906 |
ctttcgtgtcattaaccagtcaaaaaagaagtggatgggttaacttagtaggtgagttgaaactgccacatagagcccatctagtaacacgattgttcaa |
4357807 |
T |
|
| Q |
309 |
tataagtcactcaaattactcaattgatcgggtcataacccacgctcgatgaatatttttcgtgagtaaaactcgatcgcgactgtaacctttgaatggt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4357806 |
tataagtcactcaaattactcaattgatcgggtcataacccaccctcgatgaatattttttgtgagtaaaactcgatcgcggctgtaacctttgaatggt |
4357707 |
T |
|
| Q |
409 |
tatttttctgaaaatgcgagcaatttgaggggcttttaccatcatataatgcaaaccacattcata |
474 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
4357706 |
tatttttctgaaaatgtgagcagtttgaggggctattaccatcatataatgcaaaccacactcata |
4357641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University