View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-15 (Length: 656)
Name: NF1285-Insertion-15
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-15 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 37 - 656
Target Start/End: Original strand, 23381109 - 23381733
Alignment:
| Q |
37 |
aaagattaattattactgctcaagtaacattttgtgttttaacaatttataattcatgaaggttcttgcatcagacgaattcttgattgcaatgtaagca |
136 |
Q |
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| T |
23381109 |
aaagattaattattactcttcaagtaacattttgtgttttaacaatttataattcatgaaggttcttgcaacagacgaattcttgattgcaatgtaagca |
23381208 |
T |
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| Q |
137 |
agaggttcttccccgagccaaaccgtcttatagacaaaacttgcaataca--catggttttctacgctcatagatttcacccacaacaatagtttccact |
234 |
Q |
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| T |
23381209 |
agaggttcttccccgagccaaaccgtcttatagacaaaacttgcaatgtaagcaagaggttctacgctcatagatttcacctacaacaatagtttccact |
23381308 |
T |
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| Q |
235 |
ctaacattgaaattacaccttttgaaatcttatatgacaaaagatgtaagcctcattcgtctcagtttgagacatgtgagaacgttatgctagtatcgta |
334 |
Q |
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| T |
23381309 |
ctaacattgaaattacaccttttgaaatcttatatgacaaaagatgtaagactcattcgtctcagtttgagacatgtgagaaccttatgctagtatcgta |
23381408 |
T |
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| Q |
335 |
gatagttcagtcaactactaataaaatgagtcataaacaaaatgatagttaataaaattcaaaatagatgagattactctaagctgcggaaaat---agg |
431 |
Q |
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| T |
23381409 |
gatagttcagtcaactactaataaaatgagtcataaacaaaatgatagttaataaaatgcaaaatagatgagattactctaagctgcggaaaatagaagg |
23381508 |
T |
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| Q |
432 |
attaatttaaaaagattacatgattgtggtatgtagaacttttctcccagagagttgtattattttcccatttttcttcattgagaattacacattcaag |
531 |
Q |
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| T |
23381509 |
attaatttaaaaagattacatgattgtggtatgtagaacttctctcccagagagttgtattattttcccatttttcttcattgagaattacacattcaag |
23381608 |
T |
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| Q |
532 |
tttgtatttgagttacttgcataatttcatttgttagttgtaatgttattctgttctattgtatttgctgaagctcaaaatgcaaccaagagaaaactaa |
631 |
Q |
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| T |
23381609 |
tttgtatttgagttacttgcataattgcatttgttatatgtaatgttattctgttctattgtatttgctgaagctcaaaatgcaaccaagagaaaactaa |
23381708 |
T |
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| Q |
632 |
cgtggaatgttcgacagttctttga |
656 |
Q |
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| T |
23381709 |
cgtggaatgttcgacagttctttga |
23381733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 155 - 354
Target Start/End: Original strand, 9367 - 9566
Alignment:
| Q |
155 |
caaaccgtcttatagacaaaacttgcaatacacatggttttctacgctcatagatttcacccacaacaatagtttccactctaacattgaaattacacct |
254 |
Q |
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| T |
9367 |
caaaccgtcttttagacaaaacttgcaatacacatggttttcttgcttcatagatttcacctacaacaatagtttccactctaacattgaaattacacct |
9466 |
T |
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| Q |
255 |
tttgaaatcttatatgacaaaagatgtaagcctcattcgtctcagtttgagacatgtgagaa-cgttatgctagtatcgtagatagttcagtcaactact |
353 |
Q |
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| T |
9467 |
tttgaagtcttatatgac-aaagatgtaggactcatccgtgtctgtttgagacatgtgagaacccgtatgctagtatcgtagatagttcagtcaactact |
9565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 546
Target Start/End: Original strand, 41715243 - 41715338
Alignment:
| Q |
450 |
catgattgtggtatgtagaacttttctcccagagagttgtattattttcccatttt-tcttcattgagaattacacattcaagtttgtatttgagtta |
546 |
Q |
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| T |
41715243 |
catgagtgtggtatgtggaacttctctatcagagaatagt--tcttttccccttttctcttcattgataattacacatttaggtttgtatttgagtta |
41715338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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