View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-17 (Length: 545)
Name: NF1285-Insertion-17
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-17 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Complemental strand, 1236410 - 1235911
Alignment:
| Q |
8 |
gtaatttcatggtgtgtacacatgagaggtccattgtttgcctcagtttttacccctttaatgcttctcatggtagctttggctggttgtaccatattga |
107 |
Q |
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| T |
1236410 |
gtaatttcatggtgtgtacacatgagaggtccattgtttgcctcagtttttacccctttaatgcttctcatggtagctttggctggttgtaccatattga |
1236311 |
T |
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| Q |
108 |
atgagaaactacaccttggaaggtatatttgcttttctcaattt-attaatcattctaagaatgtttttgaaatactaagttgtttaattggaccctaat |
206 |
Q |
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| T |
1236310 |
atgagaaactacaccttggaaggtatatttgcttttctcaattttattaatcattctaagaatgtttttgaaatactaagttgtttaattggaccctaat |
1236211 |
T |
|
| Q |
207 |
tttttgaggtaaaatatatataatacttactttattggcacacttaaaatttgttacctttgttaacaatttcagcattattggagcggtgttgattgta |
306 |
Q |
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| T |
1236210 |
tttttgaggtaaaatcta----atacttactttattggcacacttaaaatttgttacctttgttaacaatttcagcattattggagcggtgttgattgta |
1236115 |
T |
|
| Q |
307 |
tgtggcttgtatgcggttgtatggggtaaaagtaaagagatgaagaaaaagaatcaattagtgccatcaaaaaacccacatgaatttgaccaagttgaaa |
406 |
Q |
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| T |
1236114 |
tgtggcttgtatgcggttgtatggggtaaaagtaaagagatgaagaaaaagaatcaattagtgccatcaaaaaacccacatgaatttgacccagttgaaa |
1236015 |
T |
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| Q |
407 |
tagttgtgaggtctatagaagaagataaaagcaacctcaacaacaataatcagatggttaaggataatgaagattcacaaacagatgaacatgaacagca |
506 |
Q |
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| T |
1236014 |
tagttgtgaggtctatagaaaaagataaaagcaacctcaacaacaataatcagatggttaaggataatgaagattcacaaacagatgaacatgaacaaca |
1235915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 916173 - 915996
Alignment:
| Q |
237 |
tttattggcacacttaaaatttgttacctttgttaacaatttcagcattattggagcggtgttgattgtatgtggcttgtatgcggttgtatggggtaaa |
336 |
Q |
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||||||||| ||||| ||||||| ||| |||||||| |||||| ||||||||| | |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
916173 |
tttattggctcacttgaaatttgctacttttgttaa---tttcagtattattggatcagtgttgattgtatgtggcttatatgcggttgtgtggggtaaa |
916077 |
T |
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| Q |
337 |
agtaaagagatgaagaaaaagaatcaattagtgccatcaaaaaacccacatgaatttgaccaagttgaaatagttgtgagg |
417 |
Q |
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| T |
916076 |
agtaaagagatgaagaaaaataatcaattagtgccatcacaaagctccaatgaatttgacactgttgaaatagttgtgagg |
915996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 916475 - 916350
Alignment:
| Q |
8 |
gtaatttcatggtgtgtacacatgagaggtccattgtttgcctcagtttttacccctttaatgcttctcatggtagctttggctggttgtaccatattga |
107 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| | ||| |||| || || || ||| |||||||||| |||| |
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| T |
916475 |
gtaatttcatggtgtgttcacatgagaggtccattgtttgcctctgcttttaaccctttagtacttgtcattgtggccttagctagttgtaccatgttga |
916376 |
T |
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| Q |
108 |
atgagaaactacaccttggaaggtat |
133 |
Q |
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| T |
916375 |
atgagaatctataccttggaaggtat |
916350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 25080208 - 25080262
Alignment:
| Q |
9 |
taatttcatggtgtgtacacatgagaggtccattgtttgcctcagtttttacccc |
63 |
Q |
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| T |
25080208 |
taatttcatggtgagtacactttagaggtccattgtttgcctctgattttacccc |
25080262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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