View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1285-Insertion-18 (Length: 805)

Name: NF1285-Insertion-18
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1285-Insertion-18
NF1285-Insertion-18
[»] chr8 (9 HSPs)
chr8 (62-705)||(6039120-6039769)
chr8 (252-705)||(6042937-6043401)
chr8 (62-125)||(6042606-6042669)
chr8 (8-63)||(44304170-44304225)
chr8 (10-64)||(1746016-1746070)
chr8 (8-64)||(17982968-17983023)
chr8 (8-63)||(19945157-19945212)
chr8 (8-63)||(31218572-31218626)
chr8 (8-62)||(5689582-5689635)
[»] scaffold0350 (1 HSPs)
scaffold0350 (62-487)||(42-463)
[»] scaffold0002 (1 HSPs)
scaffold0002 (8-65)||(434849-434906)
[»] chr3 (7 HSPs)
chr3 (8-63)||(5257942-5257997)
chr3 (8-63)||(5260121-5260176)
chr3 (8-63)||(9635922-9635977)
chr3 (8-63)||(19683686-19683741)
chr3 (8-63)||(40734812-40734866)
chr3 (8-63)||(801405-801464)
chr3 (8-62)||(9634621-9634674)
[»] scaffold0286 (1 HSPs)
scaffold0286 (8-62)||(11881-11935)
[»] chr7 (6 HSPs)
chr7 (8-62)||(29991368-29991422)
chr7 (8-62)||(25766757-25766810)
chr7 (8-62)||(35854231-35854285)
chr7 (8-66)||(41648810-41648867)
chr7 (8-62)||(48409122-48409175)
chr7 (8-62)||(43503947-43504005)
[»] chr6 (10 HSPs)
chr6 (8-62)||(2171326-2171380)
chr6 (10-63)||(16452126-16452179)
chr6 (8-64)||(5408867-5408923)
chr6 (8-64)||(5413192-5413248)
chr6 (10-62)||(5406002-5406054)
chr6 (10-62)||(5410327-5410379)
chr6 (8-62)||(30834333-30834387)
chr6 (8-62)||(3072552-3072610)
chr6 (9-62)||(22963508-22963561)
chr6 (9-62)||(23824832-23824885)
[»] scaffold1519 (1 HSPs)
scaffold1519 (11-64)||(1234-1287)
[»] chr4 (3 HSPs)
chr4 (8-66)||(29999624-29999682)
chr4 (10-71)||(5369872-5369933)
chr4 (8-62)||(48143363-48143417)
[»] chr1 (2 HSPs)
chr1 (8-63)||(20762983-20763038)
chr1 (8-62)||(13316151-13316205)
[»] chr5 (5 HSPs)
chr5 (8-62)||(25413075-25413129)
chr5 (8-63)||(30182903-30182958)
chr5 (8-62)||(13343375-13343429)
chr5 (8-63)||(9789020-9789075)
chr5 (8-63)||(26178201-26178256)
[»] chr2 (4 HSPs)
chr2 (8-63)||(45100069-45100123)
chr2 (8-62)||(4484128-4484181)
chr2 (8-62)||(36205464-36205518)
chr2 (8-63)||(30833663-30833717)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 62 - 705
Target Start/End: Original strand, 6039120 - 6039769
Alignment:
Q  62 aaaaacaaaacatataatcttcatgtgagttaattatacacaattggaagaaaagaaacatacttaaatcttttggaattcatagga---cttcacatgc 158  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||| ||| ||| |   ||| ||| ||    
T  6039120 aaaaactaaacatataatattcatgtgagttaataatacacaattggaagaaaagaaacataccagaatcttttggatttcgtagtaggtcttgacacgc 6039219  T
Q  159 ttttatgtgcggcggattaatccccatagatagatcaatggacctgctta--gtaaacattgattcagaaaacaa---ttttataagtatatactatgaa 253  Q
    |  ||||||||||||||||||| ||||| |||||||||||||||||||||  |||||||||||| ||||||||||   ||||| || |||||||||||      
T  6039220 tcctatgtgcggcggattaatctccataaatagatcaatggacctgcttatagtaaacattgatccagaaaacaacagttttaaaaatatatactatg-- 6039317  T
Q  254 taatgatgttacttatttcccaagttaaggaagtctctggacaattttatggcattgacgaaagaaggacaata---gaagataataacatgtgagattt 350  Q
            ||| || ||| | |  ||||||||||||||||||||||||||| |||| | ||||| |  | | ||   ||| |||||||| |||  |||||    
T  6039318 --------ttatttgttttctattttaaggaagtctctggacaattttatgacattaaggaaaggactagattactagaacataataacgtgtctgattt 6039409  T
Q  351 gtgaaagagggtgaaaagttttcatacccattacattaagcactcatatgatgaacagctacttttttcacttaggtccgaatcttgttggatcttctgt 450  Q
    |||||||||||| ||||||||||||||||||||     ||||||||||||||||||| || ||||||||  |   ||| |||||||||||| ||||||||    
T  6039410 gtgaaagagggtaaaaagttttcatacccatta-----agcactcatatgatgaacaacttcttttttcgttggagtctgaatcttgttggctcttctgt 6039504  T
Q  451 atgcaagtgctttccttctcatcacttctttcaattgg---------ctcattgcccaattccctctcattgtcatcatcaacatgtctttcaattgatt 541  Q
    ||||||| |||| | |||||||||| |||||||||||          |||||||||||||| |||||||| |||||||||||||| |||||||||||| |    
T  6039505 atgcaagcgcttacattctcatcacatctttcaattgaatcatcaatctcattgcccaatttcctctcatcgtcatcatcaacatatctttcaattgaat 6039604  T
Q  542 cagactcaaattgcattgattcattcaaatctgatccgaacctccgagacaacttcaatgcaattttcttttctaagtccctgtccaaattcatggtggc 641  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||  ||  || || || ||||||||||||||| ||||||||||||||||||||||||    
T  6039605 cagactcaaattgcattgattcattcaaatctgatcggaaccaccatgaacacctcgattcaattttcttttctacgtccctgtccaaattcatggtggc 6039704  T
Q  642 tgcaagccttggaaattctgagtaataaattgcacagagcccacactctctc-aaatataagagc 705  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||||| || ||||||||||||    
T  6039705 tgcaagccttggaaattctgagtaataaattggatagatcccacactctttcaaaatataagagc 6039769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 252 - 705
Target Start/End: Original strand, 6042937 - 6043401
Alignment:
Q  252 aataatgatgttacttatttcccaagttaaggaagtctctggacaattttatggcattgacgaaagaaggacaatagaagataataacatgtgagatttg 351  Q
    ||||||||| ||||||||||   || ||| ||| |||||| |||||||||||| ||||||  ||||||||||  |||||||||||||  |||| ||||||    
T  6042937 aataatgattttacttatttttaaa-ttagggatgtctctcgacaattttatgacattgaaaaaagaaggac--tagaagataataatgtgtgcgatttg 6043033  T
Q  352 tgaaagagggtgaaaagttttcatacccattacattaagcactcatatgatgaacagctacttttttcacttaggtccgaatcttgttggatcttctgta 451  Q
    || |||||||| || ||||||||||||||| |     |||| ||| |||||||||| || | ||||||| | | || | ||||||||||| | ||||| |    
T  6043034 tgcaagagggtaaatagttttcatacccatga-----agcagtcaaatgatgaacacctgcatttttcattcaagttcaaatcttgttggttattctgaa 6043128  T
Q  452 tgcaagtgctttccttctcatcacttctttcaattggctcat---------tgcccaattccctctcattgtcatca------tcaacatgtctttcaat 536  Q
    ||| ||| ||||| |||||||||| |||||||| || |||||         | || | ||| |||||||  ||||||      ||| ||| |||| ||||    
T  6043129 tgctagttctttcattctcatcacgtctttcaactgactcatcaatctcatttcctatttctctctcatcatcatcaccatcatcatcatatcttgcaat 6043228  T
Q  537 tgattcagactcaaattgc---attgattcattcaaatctgatccgaacctccgagacaacttcaatgcaattttcttttctaagtccctgtccaaattc 633  Q
    |||||| |||| ||||||    ||  ||||||  ||||||||||| |  ||||| ||||||| ||||||||||| |||||||||||| ||||||||||||    
T  6043229 tgattctgactgaaattgttgtatatattcatgaaaatctgatcctaggctccgtgacaactccaatgcaatttccttttctaagtctctgtccaaattc 6043328  T
Q  634 atggtggctgcaagccttggaaattctgagtaataaattgcacagagcccacactctctc-aaatataagagc 705  Q
    |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| || ||||||||||||    
T  6043329 atggtggctgcaagccttggaaattctgagtaataaattggatagatcccacactctttcaaaatataagagc 6043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 6042606 - 6042669
Alignment:
Q  62 aaaaacaaaacatataatcttcatgtgagttaattatacacaattggaagaaaagaaacatact 125  Q
    |||||||||||||||||||||||||| |||| || |||| ||| ||||||||||||||||||||    
T  6042606 aaaaacaaaacatataatcttcatgtaagttcataatacgcaaatggaagaaaagaaacatact 6042669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 44304170 - 44304225
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||    
T  44304170 tgctccacacatcatagtatgtattggtgtgattttgagaacggaattcacaacaa 44304225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 1746070 - 1746016
Alignment:
Q  10 ctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaa 64  Q
    ||||||||||||||||||||||||| |||| ||||||| || |||||||||||||    
T  1746070 ctccacacatcatagttcgtattggtgtgattttgagaccgaaattcacaacaaa 1746016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 17982968 - 17983023
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaa 64  Q
    ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||    
T  17982968 tgctccacacatcatagtttgtattggtgtga-tttgagatcggaattcacaacaaa 17983023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 19945212 - 19945157
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    |||||||||||||| |||| ||||||| |||| ||||||| |||||||||||||||    
T  19945212 tgctccacacatcaaagtttgtattggtgtgattttgagaccggaattcacaacaa 19945157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 31218572 - 31218626
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    |||||||||||||||||||  |||||| |||| ||||||| |||||||||||||||    
T  31218572 tgctccacacatcatagtttatattggtgtga-tttgagaccggaattcacaacaa 31218626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 5689582 - 5689635
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||| ||||||| |||| ||||||  ||||||||||||||    
T  5689582 tgctccacacatcatagtttgtattggtgtgattttgag-tcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 62 - 487
Target Start/End: Complemental strand, 463 - 42
Alignment:
Q  62 aaaaacaaaacatataatcttcatgtgagttaattatacacaattggaagaaaagaaacatacttaaatcttttggaattcatagga---cttcacatgc 158  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||| ||| ||| |   ||| ||| ||    
T  463 aaaaactaaacatataatattcatgtgagttaataatacacaattggaagaaaagaaacataccagaatcttttggatttcgtagtaggtcttgacacgc 364  T
Q  159 ttttatgtgcggcggattaatccccatagatagatcaatggacctgctta--gtaaacattgattcagaaaacaa---ttttataagtatatactatgaa 253  Q
    |  ||||||||||||||||||| ||||| |||||||||||||||||||||  |||||||||||| ||||||||||   ||||| || |||||||||||      
T  363 tcctatgtgcggcggattaatctccataaatagatcaatggacctgcttatagtaaacattgatccagaaaacaacagttttaaaaatatatactatg-- 266  T
Q  254 taatgatgttacttatttcccaagttaaggaagtctctggacaattttatggcattgacgaaagaaggacaata---gaagataataacatgtgagattt 350  Q
            ||| || ||| | |  ||||||||||||||||||||||||||| |||| | ||||| |  | | ||   ||| |||||||| |||  |||||    
T  265 --------ttatttgttttctattttaaggaagtctctggacaattttatgacattaaggaaaggactagattactagaacataataacgtgtctgattt 174  T
Q  351 gtgaaagagggtgaaaagttttcatacccattacattaagcactcatatgatgaacagctacttttttcacttaggtccgaatcttgttggatcttctgt 450  Q
    |||||||||||| ||||||||||||||||||||     ||||||||||||||||||| || ||||||||  |   ||| |||||||||||| ||||||||    
T  173 gtgaaagagggtaaaaagttttcatacccatta-----agcactcatatgatgaacaacttcttttttcgttggagtctgaatcttgttggctcttctgt 79  T
Q  451 atgcaagtgctttccttctcatcacttctttcaattg 487  Q
    ||||||| |||| | |||||||||| |||||||||||    
T  78 atgcaagcgcttacattctcatcacatctttcaattg 42  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 434849 - 434906
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaaa 65  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  434849 tgctccacacatcatagttcgtattggtgtgactttgagaacggaattcacaacaaaa 434906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 5257997 - 5257942
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  5257997 tgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaacaa 5257942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 5260176 - 5260121
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    |||||||||||||||||||||||||||  ||||||||||| | |||||||||||||    
T  5260176 tgctccacacatcatagttcgtattggtttgactttgagaccagaattcacaacaa 5260121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 9635977 - 9635922
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||    
T  9635977 tgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaa 9635922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 19683741 - 19683686
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||| ||||||||||| ||||||| |||| ||||||| |||||||||||||||    
T  19683741 tgctccaaacatcatagtttgtattggtgtgagtttgagaccggaattcacaacaa 19683686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 40734812 - 40734866
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||||||||| ||||||| |||| |||||| || |||||||||||||    
T  40734812 tgctccacacatcatagtttgtattggtgtgattttgag-accgaattcacaacaa 40734866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 801405 - 801464
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgac----tttgagaacggaattcacaacaa 63  Q
    |||||||||||||||| |||||||||| |||||    ||||||| |||||||||||||||    
T  801405 tgctccacacatcatatttcgtattggtgtgacacgttttgagatcggaattcacaacaa 801464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 9634674 - 9634621
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||| ||||||||| ||||||| |||| ||||||| ||||||||||||||    
T  9634674 tgctccaca-atcatagtttgtattggtgtgattttgagaccggaattcacaaca 9634621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 11881 - 11935
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  11881 tgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 29991368 - 29991422
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  29991368 tgctccacacatcatagtttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 25766810 - 25766757
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    |||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||    
T  25766810 tgctccacacatcatatttcgtattggtgtga-tttgagaccggaattcacaaca 25766757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 35854231 - 35854285
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||| ||||| | |||| |||||||  |||||||||||||    
T  35854231 tgctccacacatcatagtttgtatttgtgtgattttgagactggaattcacaaca 35854285  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 41648867 - 41648810
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaaaa 66  Q
    ||||||||||||||||||| ||||||| |||| ||||||  | ||||||||||||||||    
T  41648867 tgctccacacatcatagtttgtattggtgtgattttgag-tccgaattcacaacaaaaa 41648810  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 48409122 - 48409175
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    |||||||||||||||| |||||||||| |||| ||||||| | ||||||||||||    
T  48409122 tgctccacacatcatatttcgtattggtgtga-tttgagaccagaattcacaaca 48409175  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 43504005 - 43503947
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgac----tttgagaacggaattcacaaca 62  Q
    |||||||||||||||| |||||||||| |||||    ||||||| ||||||||||||||    
T  43504005 tgctccacacatcatatttcgtattggtgtgacacgatttgagatcggaattcacaaca 43503947  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 2171380 - 2171326
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  2171380 tgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 2171326  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 16452179 - 16452126
Alignment:
Q  10 ctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  16452179 ctccacacatcatagttcgtattggtgtgattttgagatcggaattcacaacaa 16452126  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 5408923 - 5408867
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaa 64  Q
    ||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||||    
T  5408923 tgctccacacatcatagtttgtattggtgtgactttgagactggaattcacaacaaa 5408867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 5413248 - 5413192
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaa 64  Q
    ||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||||    
T  5413248 tgctccacacatcatagtttgtattggtgtgactttgagactggaattcacaacaaa 5413192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 5406054 - 5406002
Alignment:
Q  10 ctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  5406054 ctccacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 5410379 - 5410327
Alignment:
Q  10 ctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  5410379 ctccacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 30834387 - 30834333
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    |||||||||||||||| |||||||||| |||| ||||||| || |||||||||||    
T  30834387 tgctccacacatcatatttcgtattggtgtgattttgagaccgaaattcacaaca 30834333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 3072610 - 3072552
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgac----tttgagaacggaattcacaaca 62  Q
    |||||||||||||||| |||||||||| |||||    ||||||| ||||||||||||||    
T  3072610 tgctccacacatcatatttcgtattggtgtgacacgatttgagatcggaattcacaaca 3072552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 22963561 - 22963508
Alignment:
Q  9 gctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    |||||||||||||||||| ||||||| |||| ||||||   |||||||||||||    
T  22963561 gctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 22963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 23824832 - 23824885
Alignment:
Q  9 gctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    |||||||||||||||||| ||||||| |||| ||||||   |||||||||||||    
T  23824832 gctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 23824885  T

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Target: scaffold1519 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1234 - 1287
Alignment:
Q  11 tccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaa 64  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  1234 tccacacatcatagttcgtattggtgtgactttgagaccggaattcacaacaaa 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 29999682 - 29999624
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaaaa 66  Q
    ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||    
T  29999682 tgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaaaaa 29999624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 5369933 - 5369872
Alignment:
Q  10 ctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaaaaacaaaa 71  Q
    ||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||| ||||    
T  5369933 ctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaaaaataaaa 5369872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 48143363 - 48143417
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||| ||||||| |||| ||||||  ||||||||||||||    
T  48143363 tgctccacacatcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 20762983 - 20763038
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||    
T  20762983 tgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaa 20763038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 13316205 - 13316151
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    |||||||||||| ||| |||||||||| |||| ||||||| ||||||||||||||    
T  13316205 tgctccacacattatatttcgtattggtgtgattttgagaccggaattcacaaca 13316151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 25413075 - 25413129
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||    
T  25413075 tgctccacacatcatagttcgtattggtgtgattttgaaaccggaattcacaaca 25413129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 30182903 - 30182958
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||||||||| || |||| |||| ||||||| |||||||||||||||    
T  30182903 tgctccacacatcatagtttgttttggtgtgattttgagaccggaattcacaacaa 30182958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 13343375 - 13343429
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||||||||| | |||||||||  | ||||||||||||||    
T  13343375 tgctccacacatcatagttcgtattagtgtgactttgttaccggaattcacaaca 13343429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 9789075 - 9789020
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    |||||||||||||||| || ||||||| |||  ||||||| |||||||||||||||    
T  9789075 tgctccacacatcatactttgtattggtgtggttttgagatcggaattcacaacaa 9789020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 26178201 - 26178256
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    ||||||||||||| || |||||||||| |||  ||||||| |||||||||||||||    
T  26178201 tgctccacacatcttacttcgtattggtgtggttttgagatcggaattcacaacaa 26178256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 45100069 - 45100123
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    |||||||||||||||| |||||||||| |||| ||||||| |||||||||||||||    
T  45100069 tgctccacacatcataattcgtattggtgtga-tttgagaccggaattcacaacaa 45100123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 4484181 - 4484128
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    |||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||    
T  4484181 tgctccacacatcatatttcgtattggtgtga-tttgagaccggaattcacaaca 4484128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 36205518 - 36205464
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaaca 62  Q
    ||||||||||||||||||| ||||| | |||| ||||||| ||||||||||||||    
T  36205518 tgctccacacatcatagtttgtattagtgtgattttgagaccggaattcacaaca 36205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 30833663 - 30833717
Alignment:
Q  8 tgctccacacatcatagttcgtattggcgtgactttgagaacggaattcacaacaa 63  Q
    |||||||||||||||| |||||||||| |||| ||||||| ||||||||| |||||    
T  30833663 tgctccacacatcatatttcgtattggtgtga-tttgagaccggaattcaaaacaa 30833717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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