View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1285-Insertion-20 (Length: 507)

Name: NF1285-Insertion-20
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1285-Insertion-20
NF1285-Insertion-20
[»] chr4 (1 HSPs)
chr4 (7-507)||(44694593-44695093)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Complemental strand, 44695093 - 44694593
Alignment:
Q  7 atccattacagttcaagaaattctacctggattcagaactgttttcaaatgtaccgtaccagactctgggaaggtaccattactttgtacttacctatat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  44695093 atccattacagttcaagaaattctacctggattcagaactgttttcaaatgtaccgtaccagactccgggaaggtaccattactttgtacttacttatat 44694994  T
Q  107 actatgtatagtatcatctttaatagttttagtgnnnnnnngttcattgcatctgagtatttcctgaaatcacaatgaattcataggtggaactacagta 206  Q
    |||||||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694993 actatgtaaagtatcatctttaatagttttagtgtttttttgttcattgcatctgagtatttcctgaaatcacaatgaattcataggtggaactacagta 44694894  T
Q  207 cttgaatagattcactgggattactggatgcattggattattaggaaacgaagaaggagcatatgaccctgttgtaaaattatcaggccttttaggaaca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694893 cttgaatagattcactgggattactggatgcattggattattaggaaacgaagaaggagcatatgaccctgttgtaaaattatcaggccttttaggaaca 44694794  T
Q  307 agcattctgtccctgggagccaatgttgccttgcacataccaacaagatcaataaccaagttgactgctggcttcggcttaaacactgccttccttgaag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694793 agcattctgtccctgggagccaatgttgccttgcacataccaacaagatcaataaccaagttgactgctggcttcggcttaaacactgccttccttgaag 44694694  T
Q  407 cttcattgaccttgtaagatatatccatcaaaaactactgatgatctataaactaactttaggatgtaattaatcgttactgcttagtgttctgctactg 506  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694693 cttcattgaccttgtaagatatatccatcaaaaactactggtgatctataaactaactttaggatgtaattaatcgttactgcttagtgttctgctactg 44694594  T
Q  507 t 507  Q
    |    
T  44694593 t 44694593  T

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