View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-21 (Length: 680)
Name: NF1285-Insertion-21
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-21 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 95 - 676
Target Start/End: Complemental strand, 3089355 - 3088777
Alignment:
| Q |
95 |
gtcatctggtacacccgtagttgaattgattaaaacaattgaattatggtccagatgtctcgtcggtttgatcttctactaggtttt-aaaaccttgctt |
193 |
Q |
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| T |
3089355 |
gtcatctggtacacccgtagttgaattgattaaaacaattgaatcatggtccatatgtctcgtcggttcgatcttctaccaggtttttaaaaccttgctt |
3089256 |
T |
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| Q |
194 |
taaagaaacgcctatcagtaagtggttgaatttatagtttgtgacttgagttacctgatagagtcattccagatttaactccttcataaccccatttgca |
293 |
Q |
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| T |
3089255 |
taaagaaacgcctatcagtaagtggttgaatttatagtttgtgacttgagttacctgatagagtcattccagatttaactccttcataaccccatttgca |
3089156 |
T |
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| Q |
294 |
cgctatttgtatgctctctttagcccaactacatgattagttcaaaacaagcacatccaaaataagaaatctaaacattatttaacatttggaggcaaaa |
393 |
Q |
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| T |
3089155 |
cgctatttgtatgctctctttagcccaactacatgattagttcaaaacaagaag---caaaa--agaaatctaaacattaattaacatttggaggcaaaa |
3089061 |
T |
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| Q |
394 |
agagattgctgaaattgaaagtggaagagaaaaggtactcacttatttacacaactagagatatccttgcaatgttcccaagaagcaacatcatctgacc |
493 |
Q |
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| T |
3089060 |
agagattgctgaaattgaaagtggaagagaaaaggtgctcacttatttacacaactagagatatccttgcaatgttcccaagaagcaacatcatctgacc |
3088961 |
T |
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| Q |
494 |
agattccctgcatacaagaaataataagttgattttatttggagccaataaaaaatccatgtgttcattcaatctaggaagagtgacagaaaaatttaaa |
593 |
Q |
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| T |
3088960 |
agattccctgcatacaagaaataataagttgattttatttggagccaataaaaaatccatgtgttcattcaatctaggaagagtgacagaaaaatttaaa |
3088861 |
T |
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| Q |
594 |
taatgttacttacattggtatagtttttctc-atgtcttggaggaggagtgtcacatctttgtcatagtaatctgctaatgctg |
676 |
Q |
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| T |
3088860 |
taatgttacttacattggtatagtttttctcaatgtcttggaggaggagtgtcacatctttgtcatagtaatctgctaatgctg |
3088777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 3089441 - 3089399
Alignment:
| Q |
9 |
acattgcagtatgattgaaccggttcaaccacggttggttcaa |
51 |
Q |
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| T |
3089441 |
acattgcagtatgattgaaccgtttcaaccacggttggttcaa |
3089399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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