View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-22 (Length: 248)
Name: NF1285-Insertion-22
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-22 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 47059777 - 47059538
Alignment:
| Q |
8 |
tgaatgccctttctcaatcaatttatacaacaaatcagcaaacatcctcgctctatccttaattaactgaatattctgattttcatcaagttcacaccgt |
107 |
Q |
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| T |
47059777 |
tgaatgccctttttcaatcaatttatacaacaaatcagcaaacatcctcgctctatccttaattaactgaatattctgattttcatcaagttcacaccgt |
47059678 |
T |
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| Q |
108 |
tcgatgaaacatgtggcaatctctggattatgcctcaaatcaagcaaacgataggccctctccaattcagattgatcacacccatgtggcaaccccatca |
207 |
Q |
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| T |
47059677 |
tcgatgaaacatgtggcaatctctgaattatgcctcaaatcaagcaaaagataggccctctccaattcagattgatcacacccatgtggcaaccccatca |
47059578 |
T |
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| Q |
208 |
aagtatagtaatccacattaaatatttcagcattgtcctt |
247 |
Q |
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| T |
47059577 |
aagtatagtaatccacattaaatatttcagcattgtcctt |
47059538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 11726302 - 11726195
Alignment:
| Q |
135 |
ttatgcctcaaatcaagcaaacgataggccctctccaattcagattgatcacacccatgtggcaaccccatcaaagtatagtaatccacattaaatattt |
234 |
Q |
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||||||||||||||||||||| || | |||||||||||| ||| || ||||||||||||| ||||| |||||| || ||||||||| ||||| |||| |
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| T |
11726302 |
ttatgcctcaaatcaagcaaatagtacgtcctctccaattctgatcgaacacacccatgtggaaacccaatcaaaacatggtaatccacgttaaacattt |
11726203 |
T |
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| Q |
235 |
cagcattg |
242 |
Q |
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| T |
11726202 |
cagcattg |
11726195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 11726797 - 11726876
Alignment:
| Q |
165 |
ctctccaattcagattgatcacacccatgtggcaaccccatcaaagtatagt-aatccacattaaatatttcagcattgt |
243 |
Q |
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| T |
11726797 |
ctctccaattctgatcgatcacattcatatggaaaccccatcaaagcatagtaaatccacattaaacatttcagcattgt |
11726876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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