View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1285-Insertion-29 (Length: 524)

Name: NF1285-Insertion-29
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1285-Insertion-29
NF1285-Insertion-29
[»] chr2 (25 HSPs)
chr2 (7-139)||(42369783-42369915)
chr2 (141-278)||(42369621-42369758)
chr2 (274-422)||(42368317-42368465)
chr2 (53-219)||(8536174-8536336)
chr2 (142-249)||(42370884-42370991)
chr2 (143-217)||(4976440-4976514)
chr2 (143-217)||(4994347-4994421)
chr2 (142-219)||(8536820-8536897)
chr2 (303-422)||(17179260-17179380)
chr2 (475-522)||(42368217-42368264)
chr2 (348-422)||(17179093-17179167)
chr2 (357-422)||(22653036-22653101)
chr2 (310-396)||(12852880-12852967)
chr2 (346-422)||(30202892-30202968)
chr2 (475-522)||(36422630-36422677)
chr2 (348-422)||(5435192-5435266)
chr2 (348-422)||(27264582-27264656)
chr2 (347-381)||(33837805-33837839)
chr2 (152-217)||(9370997-9371062)
chr2 (348-409)||(22900974-22901035)
chr2 (142-191)||(41519859-41519908)
chr2 (142-198)||(4975754-4975810)
chr2 (142-198)||(4993662-4993718)
chr2 (346-422)||(22900225-22900301)
chr2 (348-380)||(41313318-41313350)
[»] chr4 (19 HSPs)
chr4 (53-219)||(50710262-50710428)
chr4 (53-219)||(53664249-53664414)
chr4 (142-209)||(50709706-50709773)
chr4 (142-212)||(53665020-53665090)
chr4 (153-238)||(6246802-6246887)
chr4 (307-422)||(39135519-39135635)
chr4 (179-262)||(33370846-33370929)
chr4 (353-412)||(46796045-46796104)
chr4 (187-257)||(232028-232098)
chr4 (166-219)||(6680300-6680353)
chr4 (310-381)||(15445430-15445502)
chr4 (142-197)||(6247404-6247460)
chr4 (142-198)||(10420975-10421031)
chr4 (142-214)||(11029773-11029845)
chr4 (355-422)||(23752056-23752123)
chr4 (348-422)||(26202395-26202469)
chr4 (349-398)||(1273466-1273515)
chr4 (142-219)||(10421515-10421592)
chr4 (349-381)||(52880848-52880880)
[»] chr8 (21 HSPs)
chr8 (53-217)||(38686901-38687064)
chr8 (142-219)||(38686340-38686417)
chr8 (53-219)||(33802219-33802384)
chr8 (355-420)||(8502285-8502350)
chr8 (142-219)||(33801536-33801613)
chr8 (348-419)||(14433824-14433895)
chr8 (143-217)||(43972021-43972095)
chr8 (142-198)||(12350588-12350644)
chr8 (353-412)||(24068368-24068427)
chr8 (148-198)||(15183788-15183838)
chr8 (142-219)||(39257671-39257748)
chr8 (142-219)||(43924527-43924604)
chr8 (142-198)||(12350025-12350081)
chr8 (346-381)||(6843786-6843821)
chr8 (348-422)||(3612592-3612666)
chr8 (348-422)||(4675887-4675961)
chr8 (346-396)||(14820224-14820274)
chr8 (355-396)||(31625419-31625460)
chr8 (142-195)||(43924952-43925005)
chr8 (153-250)||(43971284-43971381)
chr8 (355-419)||(33510233-33510297)
[»] chr7 (19 HSPs)
chr7 (39-219)||(46757461-46757651)
chr7 (346-415)||(19848850-19848919)
chr7 (346-422)||(21171495-21171571)
chr7 (348-413)||(18801248-18801313)
chr7 (306-381)||(34557387-34557463)
chr7 (178-256)||(32548643-32548721)
chr7 (153-257)||(12732246-12732350)
chr7 (353-409)||(17288242-17288298)
chr7 (355-422)||(1903870-1903937)
chr7 (353-412)||(33459562-33459621)
chr7 (302-379)||(38778963-38779041)
chr7 (353-412)||(45721785-45721844)
chr7 (346-396)||(19278384-19278434)
chr7 (348-422)||(33228880-33228954)
chr7 (348-422)||(40501464-40501538)
chr7 (353-411)||(41516364-41516422)
chr7 (346-380)||(41618550-41618584)
chr7 (346-422)||(1904029-1904105)
chr7 (142-198)||(46759196-46759252)
[»] chr5 (13 HSPs)
chr5 (150-256)||(4554657-4554763)
chr5 (346-422)||(19050780-19050856)
chr5 (346-422)||(8706049-8706125)
chr5 (355-422)||(15154076-15154143)
chr5 (355-422)||(641889-641956)
chr5 (353-412)||(5975794-5975853)
chr5 (346-381)||(15509226-15509261)
chr5 (166-256)||(26711568-26711659)
chr5 (166-256)||(26981305-26981396)
chr5 (348-419)||(38394715-38394786)
chr5 (347-381)||(32521718-32521752)
chr5 (348-422)||(37371192-37371266)
chr5 (348-396)||(18693731-18693779)
[»] chr1 (19 HSPs)
chr1 (141-256)||(31788209-31788324)
chr1 (142-237)||(14925276-14925371)
chr1 (142-219)||(11469118-11469195)
chr1 (142-198)||(11469699-11469755)
chr1 (347-422)||(40135346-40135421)
chr1 (349-412)||(50679840-50679903)
chr1 (348-422)||(20171171-20171245)
chr1 (348-422)||(25866579-25866653)
chr1 (348-422)||(27114716-27114790)
chr1 (348-422)||(33941350-33941424)
chr1 (142-198)||(31787536-31787592)
chr1 (346-422)||(38458117-38458193)
chr1 (355-422)||(25035398-25035465)
chr1 (355-422)||(25040611-25040678)
chr1 (346-396)||(26056182-26056232)
chr1 (348-422)||(46280780-46280854)
chr1 (348-422)||(47511400-47511474)
chr1 (348-381)||(1873904-1873937)
chr1 (348-381)||(34532752-34532785)
[»] chr3 (10 HSPs)
chr3 (349-412)||(48252967-48253030)
chr3 (304-381)||(7822036-7822114)
chr3 (348-422)||(30431408-30431482)
chr3 (347-381)||(39190774-39190808)
chr3 (349-413)||(26798924-26798988)
chr3 (346-381)||(53049087-53049122)
chr3 (166-219)||(15450262-15450315)
chr3 (142-219)||(38337411-38337488)
chr3 (142-195)||(49287748-49287801)
chr3 (346-422)||(2224903-2224979)
[»] scaffold0189 (1 HSPs)
scaffold0189 (150-219)||(12801-12870)
[»] scaffold0002 (1 HSPs)
scaffold0002 (346-380)||(458511-458545)
[»] chr6 (4 HSPs)
chr6 (309-381)||(13173030-13173103)
chr6 (346-381)||(2138687-2138722)
chr6 (346-381)||(26584087-26584122)
chr6 (142-195)||(27763474-27763527)
[»] scaffold0177 (1 HSPs)
scaffold0177 (311-381)||(1750-1821)
[»] scaffold0071 (1 HSPs)
scaffold0071 (166-219)||(11876-11929)
[»] scaffold0025 (1 HSPs)
scaffold0025 (349-422)||(54625-54698)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 9e-62; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 42369915 - 42369783
Alignment:
Q  7 aattttttgtcacaaagagagaatcacatggccatgcccatggaagttttgccattgaaatatagggaatggtttttgaaaaatctatttttctgtcact 106  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42369915 aattttttgtcactgagagagaatcacatgcccatgcccatggaagttttgccattgaaatatagggaatggtttttgaaaaatctatttttctgtcact 42369816  T
Q  107 gccaaggattgaaggagaggaagaaggagatcc 139  Q
    |||||||||||||||||||||||||||||||||    
T  42369815 gccaaggattgaaggagaggaagaaggagatcc 42369783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 141 - 278
Target Start/End: Complemental strand, 42369758 - 42369621
Alignment:
Q  141 taaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttc 240  Q
    |||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42369758 taaacaatttggtgttgagtgtctatgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaactttccttttc 42369659  T
Q  241 catactaaaccacaccatcaaattattttgacttactt 278  Q
    ||||||||||| |||||||||||||| ||||| |||||    
T  42369658 catactaaaccccaccatcaaattatattgacgtactt 42369621  T

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Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 274 - 422
Target Start/End: Complemental strand, 42368465 - 42368317
Alignment:
Q  274 tacttcaacaaattgaaggttttatataattatttttggcttaatacatgctttggtccttaannnnnnnnnggattttattttggtcccctaattataa 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         |||||| ||||||||||||||| |||||    
T  42368465 tacttcaacaaattgaaggttttatataattatttttggcttaatacatgatttggtccttaacttatttttggatttcattttggtcccctaactataa 42368366  T
Q  374 agtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  42368365 agtgtctcgatttggtcccataagtatatctccgtttacccaagtggtc 42368317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 8536336 - 8536174
Alignment:
Q  53 ttttgccattgaaatatagggaatggtttttgaaaaatctatttttct-gtcactgccaa-ggattgaaggagaggaagaaggagatccctaaaaaattt 150  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||| | |||||   ||| || ||||||||||||||||||  ||      ||| ||||    
T  8536336 ttttgccattaaaatttagagaatggtttttgaaaaatctattttttttgtcaccaacaatggtttgaaggagaggaagaagagga------aaatattt 8536243  T
Q  151 ggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    | |||||||||| | ||||||||| ||||||||||||||||||||| |  |||||||||||||||||||    
T  8536242 gatgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatgg 8536174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 42370884 - 42370991
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttcc 241  Q
    |||||||||||||| |||||| | |||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||   ||||||| ||||| || ||    
T  42370884 aaaaaatttggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattccc 42370983  T
Q  242 atactaaa 249  Q
    ||||||||    
T  42370984 atactaaa 42370991  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 4976440 - 4976514
Alignment:
Q  143 aaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccat 217  Q
    |||||||||||||||||||| | || ||||| ||||||||||| |||||||||||| ||| ||| ||||||||||    
T  4976440 aaaaatttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccat 4976514  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 4994347 - 4994421
Alignment:
Q  143 aaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccat 217  Q
    |||||||||||||||||||| | || ||||| ||||||||||| |||||||||||| ||| ||| ||||||||||    
T  4994347 aaaaatttggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccat 4994421  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 8536820 - 8536897
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    |||| |||||||||||||||| | ||||||||  |||||||||||||||||||||||  || ||||||||| ||||||    
T  8536820 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaacatttacttttccatgg 8536897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 17179380 - 17179260
Alignment:
Q  303 ttatttttggcttaatacatgctttggtcc-ttaannnnnnnnnggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtata 401  Q
    |||||| ||||||||||||||||||||||| ||||         | |||| | ||||||||||||| | |||| |||||| || | ||||| ||||||||    
T  17179380 ttatttatggcttaatacatgctttggtcccttaacttatttttgaatttcaatttggtcccctaactttaaactgtctcaatttggtcccctaagtata 17179281  T
Q  402 cctccgtttacccaagtggtc 422  Q
    |||||||||| ||||||||||    
T  17179280 cctccgtttatccaagtggtc 17179260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 522
Target Start/End: Complemental strand, 42368264 - 42368217
Alignment:
Q  475 gattgtaggtccactggatataacagtgaaccacctgtatcttatttt 522  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  42368264 gattgtaagtccactgtatataacagtgaaccacctgtatctaatttt 42368217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 17179093 - 17179167
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||| ||||||||||||| | |||| |||||| || | ||||| |||||||||||||||||| |||| |||||    
T  17179093 attttaatttggtcccctaactttaaactgtctcaatttggtcccctaagtatacctccgtttatccaactggtc 17179167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 22653101 - 22653036
Alignment:
Q  357 tggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||| | |||| |||||| || | ||||| ||||||||||||||||||||||| |||||    
T  22653101 tggtcccctaactttaaactgtctcaatttggtcccctaagtatacctccgtttacccaactggtc 22653036  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 12852880 - 12852967
Alignment:
Q  310 tggcttaatacatgctttggtcc-ttaannnnnnnnnggattttattttggtcccctaattataaagtgtctcgatcttgtcccataa 396  Q
    ||||||||||||||||||||||| ||||         |||||| ||||||||||||||| ||||||||||||| || | |||||||||    
T  12852880 tggcttaatacatgctttggtcccttaacttacttttggatttcattttggtcccctaactataaagtgtctcaatttggtcccataa 12852967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 30202968 - 30202892
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||| | ||||||||||||| | |||| |||||| || |  |||| |||||||||||||||||| ||||||||||    
T  30202968 ggatttcaatttggtcccctaactttaaactgtctcaatttgatcccttaagtatacctccgtttatccaagtggtc 30202892  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 522
Target Start/End: Complemental strand, 36422677 - 36422630
Alignment:
Q  475 gattgtaggtccactggatataacagtgaaccacctgtatcttatttt 522  Q
    |||||||||||||||| |||||| ||||||||||| |||||| |||||    
T  36422677 gattgtaggtccactgtatataatagtgaaccaccggtatctaatttt 36422630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 5435192 - 5435266
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| ||||||||||| ||| | |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  5435192 atttcattttggtcccttaactttaaactgtctcaatttggtcccataactttacctccgtttacctaagtggtc 5435266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 27264656 - 27264582
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| ||||||||||| ||| | |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  27264656 atttcattttggtcccttaactttaaattgtctcaatttggtcccataactttacctccgtttacctaagtggtc 27264582  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 33837839 - 33837805
Alignment:
Q  347 gattttattttggtcccctaattataaagtgtctc 381  Q
    ||||||||||||||||||||| |||||||||||||    
T  33837839 gattttattttggtcccctaactataaagtgtctc 33837805  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 9371062 - 9370997
Alignment:
Q  152 gtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccat 217  Q
    |||||||| |||| |||||||| ||||||||  | || ||||||||||| | ||||||||||||||    
T  9371062 gtgttgagagtgtatgataaaagtatgttcttcatttaatctaatggctgaaatttactttcccat 9370997  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 22901035 - 22900974
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtt 409  Q
    |||||| ||||||||||||| | |||| |||||| || | ||||| ||||||||||||||||    
T  22901035 attttaatttggtcccctaactttaaactgtctcaatttagtcccctaagtatacctccgtt 22900974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 41519859 - 41519908
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttat 191  Q
    |||||||||||||||| |||| | || ||||| |||||||||||||||||    
T  41519859 aaaaaatttggtgttgggtgtctatggtaaaagtatgttctctactttat 41519908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 4975810 - 4975754
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| || |||||||| | | |||||||| ||||||||||||||||| ||||||    
T  4975810 aaaaaatctgatgttgagtctctatgataaaagtatgttctctactttatttaatgg 4975754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 4993718 - 4993662
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| || |||||||| | | |||||||| ||||||||||||||||| ||||||    
T  4993718 aaaaaatctgatgttgagtctctatgataaaagtatgttctctactttatttaatgg 4993662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 22900225 - 22900301
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||| | ||||||||||||| | |||| |||||| || | ||| | |||||||| | ||||||||||||||||||    
T  22900225 ggatttcaatttggtcccctaactttaaactgtctcaatttggtctcctaagtatatccccgtttacccaagtggtc 22900301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 41313350 - 41313318
Alignment:
Q  348 attttattttggtcccctaattataaagtgtct 380  Q
    |||||||||||||||||||| ||||||||||||    
T  41313350 attttattttggtcccctaactataaagtgtct 41313318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 50710262 - 50710428
Alignment:
Q  53 ttttgccattgaaatatagggaatggtttttgaaaaatctatttttct--gtcactgccaa-ggattgaaggagaggaagaaggagatccctaaaaaatt 149  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||| |  |||||   ||| || |||||||||||||||||| |||     |||| |||    
T  50710262 ttttgccattaaaatttagagaatggtttttgaaaaatctatttttttttgtcaccaacaatggtttgaaggagaggaagaagaagagg---aaaatatt 50710358  T
Q  150 tggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    ||||||||||||| | ||||||| | |||||||||||||||||||||||  |||||||||||||||||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatgg 50710428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 53664414 - 53664249
Alignment:
Q  53 ttttgccattgaaatatagggaatggtttttgaaaaatctatttttct-gtcactgccaa-ggattgaaggagaggaagaaggagatccctaaaaaattt 150  Q
    ||||||| || |||| ||| |||||||||||||||||||||||||| | |||||   ||| || |||||||||| ||||||| |||     |||| ||||    
T  53664414 ttttgcccttaaaatttagagaatggtttttgaaaaatctattttttttgtcaccaacaatggtttgaaggagacgaagaagaagagg---aaaagattt 53664318  T
Q  151 ggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    | |||||||||| | ||||||||  |||||||||| ||||||||||||  |||||||||||||||||||    
T  53664317 gatgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatgg 53664249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 50709773 - 50709706
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttac 209  Q
    |||| |||||||||||||||| | |||||||| |||||||||||||||||||||| |  |||||||||    
T  50709773 aaaagatttggtgttgagtgtctatgataaaactatgttctctactttatctaatagtcaatatttac 50709706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 53665020 - 53665090
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttacttt 212  Q
    |||| |||||||||||||||| | ||||||||  |||||||||||||||| ||||||  ||||||||||||    
T  53665020 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttt 53665090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 6246887 - 6246802
Alignment:
Q  153 tgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttt 238  Q
    |||||||||| | |||||||| |||||||||||| |||||||||||  || ||| ||||||||||||   |||||||||| |||||    
T  6246887 tgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttcccttt 6246802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 422
Target Start/End: Complemental strand, 39135635 - 39135519
Alignment:
Q  307 ttttggcttaatacatgctttggtcc-ttaannnnnnnnnggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctc 405  Q
    |||||| ||||||||||||||||||| ||||         |||||| | ||| ||||||||| | |||| |||||| || | ||||| ||||||||||||    
T  39135635 ttttggtttaatacatgctttggtcccttaatttatttttggatttcaatttagtcccctaactttaaactgtctcaatttggtcccctaagtatacctc 39135536  T
Q  406 cgtttacccaagtggtc 422  Q
    |||||||||||||||||    
T  39135535 cgtttacccaagtggtc 39135519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 33370846 - 33370929
Alignment:
Q  179 ttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttccatactaaaccacaccatcaaa 262  Q
    |||||||||| ||||||||||||| ||| ||||||||||||   ||||||| | |||||| |||| ||||||| |||| |||||    
T  33370846 ttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcctttcccatgctaaaccccaccttcaaa 33370929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 46796104 - 46796045
Alignment:
Q  353 attttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttac 412  Q
    ||||||||||||||| ||||||||||||| || | ||||||||||| | |||||||||||    
T  46796104 attttggtcccctaactataaagtgtctcaatttggtcccataagtcttcctccgtttac 46796045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 232028 - 232098
Alignment:
Q  187 tttatctaatggctaatatttactttcccatggattgaaacaattttccttttccatactaaaccacacca 257  Q
    |||||||||||| ||| ||||||||||||||||   ||||||| || ||||| |||||||||||| |||||    
T  232028 tttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacca 232098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 6680300 - 6680353
Alignment:
Q  166 tgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    |||||||| |||||||| ||||| |||||||||  |||||||||||||||||||    
T  6680300 tgataaaactatgttctttacttaatctaatggtcaatatttactttcccatgg 6680353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 15445430 - 15445502
Alignment:
Q  310 tggcttaatacatgctttggtcc-ttaannnnnnnnnggattttattttggtcccctaattataaagtgtctc 381  Q
    ||||||||||||||||||||||| ||||         |||||| |||||||||||||||||||||||||||||    
T  15445430 tggcttaatacatgctttggtcccttaacttatttttggatttcattttggtcccctaattataaagtgtctc 15445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 6247404 - 6247460
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaat-tatgttctctactttatctaatg 197  Q
    ||||||| ||||||||||||| | ||||||||  |||||||||||||||||||||||    
T  6247404 aaaaaatctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatg 6247460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 10421031 - 10420975
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| ||||||||||||| | |||||||| |||||| |||| ||||||||||||    
T  10421031 aaaaaatctggtgttgagtgtctatgataaaagtatgttatctagtttatctaatgg 10420975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 11029773 - 11029845
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcc 214  Q
    ||||||| | |||||||| |||| | |||| ||| |||||| ||||| |||||||| ||||||||||||||||    
T  11029773 aaaaaatctcgtgttgagagtgtataataagattgtgttctttacttgatctaatgtctaatatttactttcc 11029845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 23752056 - 23752123
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||||| | |||| |||||| || | ||||| ||||||||| | |||||||||||||||||    
T  23752056 tttggtcccctaactttaaattgtctcaatttggtcccctaagtatactttcgtttacccaagtggtc 23752123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 26202469 - 26202395
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| ||||||||||| ||| | |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  26202469 atttcattttggtcccttaactttaaactgtctcaatttggtcccataactttacctccgtttacctaagtggtc 26202395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 1273515 - 1273466
Alignment:
Q  349 ttttattttggtcccctaattataaagtgtctcgatcttgtcccataagt 398  Q
    ||||| ||||||||||||| ||||||||||||| || | |||||||||||    
T  1273515 ttttaatttggtcccctaactataaagtgtctcaatttggtcccataagt 1273466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 10421515 - 10421592
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    ||||||| ||||||||||||| | |||||||| ||||||||||| || |||||| ||  || |||  |||||||||||    
T  10421515 aaaaaatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgg 10421592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 52880848 - 52880880
Alignment:
Q  349 ttttattttggtcccctaattataaagtgtctc 381  Q
    ||||||||||||||||||| |||||||||||||    
T  52880848 ttttattttggtcccctaactataaagtgtctc 52880880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 38686901 - 38687064
Alignment:
Q  53 ttttgccattgaaatatagggaatggtttttgaaaaatctatttttct-gtcactgccaa-ggattgaaggagaggaagaaggagatccctaaaaaattt 150  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||| | |||||   ||| || |||||||||||||||||| |||     |||| ||||    
T  38686901 ttttgccattaaaatttagagaatggtttttgaaaaatctattttttttgtcaccaacaacggtttgaaggagaggaagaagaagagg---aaaatattt 38686997  T
Q  151 ggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccat 217  Q
    | |||||||||| | ||||||||| ||||||||||||||||||||||   |||||||||||||||||    
T  38686998 gatgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaatatttactttcccat 38687064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 38686417 - 38686340
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    |||| |||||||||||||||| | ||||||||  |||||||||||||||||||||||  |||||||||||||||||||    
T  38686417 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatgg 38686340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 33802219 - 33802384
Alignment:
Q  53 ttttgccattgaaatatagggaatggtttttgaaaaatctatttttct-gtcactgccaa-ggattgaaggagaggaagaaggagatccctaaaaaattt 150  Q
    ||||||| || |||| ||| |||||||||||||||||||||||||| | |||||   ||| || |||||||||| ||||||| |||     |||| ||||    
T  33802219 ttttgcccttaaaatttagagaatggtttttgaaaaatctattttttttgtcaccaacaatggtttgaaggagacgaagaagaagagg---aaaagattt 33802315  T
Q  151 ggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    | |||||||||| | ||||||||  |||||||||| ||||| ||||||  |||||||||||||||||||    
T  33802316 gatgttgagtgtctatgataaaaccatgttctctattttatttaatggtcaatatttactttcccatgg 33802384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 8502350 - 8502285
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtgg 420  Q
    ||||||||||||| | |||| |||||| || ||||||| |||||||||||||||||||||||||||    
T  8502350 tttggtcccctaactttaaactgtctcaattttgtcccctaagtatacctccgtttacccaagtgg 8502285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 33801613 - 33801536
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    |||| |||||||||||||||| | ||||||||  |||||||||||||||| ||||||  |||||||||||| ||||||    
T  33801613 aaaagatttggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaatatttacttttccatgg 33801536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 14433895 - 14433824
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtg 419  Q
    |||||| ||||||||||||| | |||| |||||| || | ||||| ||||||||||||||||||||||||||    
T  14433895 attttaatttggtcccctaactttaaactgtctcaatttggtcccctaagtatacctccgtttacccaagtg 14433824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 43972021 - 43972095
Alignment:
Q  143 aaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccat 217  Q
    |||||| ||||||||||||| | || ||||| ||||||||||| |||||||||||| ||| ||| ||||||||||    
T  43972021 aaaaatctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccat 43972095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 12350588 - 12350644
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| ||||||||||||| | |||||||| |||||||||||| |||||||||||    
T  12350588 aaaaaatctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatgg 12350644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 24068368 - 24068427
Alignment:
Q  353 attttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttac 412  Q
    ||||||||||||||| ||||||||||||| || | ||||||||||| | |||||||||||    
T  24068368 attttggtcccctaactataaagtgtctcaatttggtcccataagtcttcctccgtttac 24068427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 15183788 - 15183838
Alignment:
Q  148 tttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    |||||| |||||||| ||||||||||| ||||| |||||||||||||||||    
T  15183788 tttggttttgagtgtctgtgataaaatcatgttttctactttatctaatgg 15183838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 39257748 - 39257671
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    |||||||||| |||||||| | | |||||||| ||||||||||||||||| ||||||  || |||  |||||||||||    
T  39257748 aaaaaatttgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatgg 39257671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 43924604 - 43924527
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    ||||||||||||||||||||| | |||||||| ||||||||||| || |||||| ||  || |||  |||||||||||    
T  43924604 aaaaaatttggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgg 43924527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 12350081 - 12350025
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| ||||||||||||| | ||||||||  ||||||| |||||||||||||||    
T  12350081 aaaaaatctggtgttgagtgtctatgataaaagcatgttctttactttatctaatgg 12350025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 6843786 - 6843821
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||| |||||||||||||    
T  6843786 ggattttattttggtcccctaactataaagtgtctc 6843821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 3612666 - 3612592
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||||||||| | ||| | |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  3612666 attttattttggtctcttaactttaaattgtctcaatttggtcccataactttacctccgtttacctaagtggtc 3612592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 4675961 - 4675887
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||||||||||| ||| | ||||  ||||| || | ||||||||| | |||||||||||||| ||||||||    
T  4675961 attttattttggtcccttaactttaaaccgtctcaatttggtcccataactttacctccgtttacctaagtggtc 4675887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 14820224 - 14820274
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataa 396  Q
    |||||||| ||||||||||||| ||||||||||||| || | |||||||||    
T  14820224 ggattttaatttggtcccctaactataaagtgtctcaatttagtcccataa 14820274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 31625460 - 31625419
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataa 396  Q
    ||||||||||||||||||||||||||| || | |||||||||    
T  31625460 tttggtcccctaattataaagtgtctcaatttggtcccataa 31625419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 43924952 - 43925005
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaa 195  Q
    ||||||| ||||||||||||| | |||||||| ||||||||||| || ||||||    
T  43924952 aaaaaatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaa 43925005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 43971381 - 43971284
Alignment:
Q  153 tgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttccatactaaac 250  Q
    |||||||| | | |||||||| ||||||||||||||||| ||||||  || |||  |||||||||||   ||||||| ||  | ||||||||||||||    
T  43971381 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttctcatttccatactaaac 43971284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 33510233 - 33510297
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtg 419  Q
    |||||||| |||| | |||| |||||| || | ||||  ||||||||||||||||||||||||||    
T  33510233 tttggtcctctaactttaaactgtctcaatttggtcctctaagtatacctccgtttacccaagtg 33510297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 46757651 - 46757461
Alignment:
Q  39 catgcccatggaagttttgccattgaaatatagggaatggtttttgaaaaatctattttt-ctgtcactgccaaggattgaaggagag-gaagaaggaga 136  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||| | | ||||||||||  |  || || ||    
T  46757651 catgcccatgtaagttttgccattgaaatatagggaatagattttgaaaaatctattttttctgtaactgccgatggttgaaggagatcgtcgatggtga 46757552  T
Q  137 -tccct-------aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
     |   |       |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  46757551 atgggtgtggggaaaaaaaattggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatgg 46757461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 19848919 - 19848850
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttaccca 415  Q
    |||||| ||||||||||| ||| ||||||||||||| || | ||||||||| ||||||||||||||||||    
T  19848919 ggatttcattttggtcccttaactataaagtgtctcaatttggtcccataaatatacctccgtttaccca 19848850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 21171571 - 21171495
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||| | ||||||||||||| | |||| |||||| || | ||||| |||||||||||||||||||||||||||||    
T  21171571 ggatttcaatttggtcccctaactttaaattgtctcaatttggtcccctaagtatacctccgtttacccaagtggtc 21171495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 18801248 - 18801313
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacc 413  Q
    |||| ||||||||||||||| ||||||||||||| || | ||||||||| |||||||| |||||||    
T  18801248 atttcattttggtcccctaactataaagtgtctcaatttggtcccataaatatacctctgtttacc 18801313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 34557387 - 34557463
Alignment:
Q  306 tttttggcttaatacatgctttggt-ccttaannnnnnnnnggattttattttggtcccctaattataaagtgtctc 381  Q
    ||||||||||||||||||||||||| ||||||         |||||||||||||||||||||| |||||||||||||    
T  34557387 tttttggcttaatacatgctttggttccttaacttattttcggattttattttggtcccctaactataaagtgtctc 34557463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 32548643 - 32548721
Alignment:
Q  178 gttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttccatactaaaccacacc 256  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||   ||||||| | || ||| |||||||||||| ||||    
T  32548643 gttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcatttcccatactaaaccccacc 32548721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 12732350 - 12732246
Alignment:
Q  153 tgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttccatactaaacca 252  Q
    ||||||| || | |||||||| |||||||| ||| | |||||||||  |||||||||||||||||||   |||||  ||| ||||| |||| |||||||     
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttcccatgctaaaccc 12732251  T
Q  253 cacca 257  Q
    |||||    
T  12732250 cacca 12732246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 17288298 - 17288242
Alignment:
Q  353 attttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtt 409  Q
    ||||||||||||||| ||||||||||||| || | ||||||||||| | ||||||||    
T  17288298 attttggtcccctaactataaagtgtctcaatttggtcccataagtcttcctccgtt 17288242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 1903870 - 1903937
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||||| | |||| |||||| || | ||||| |||||||||||||||||| |||| |||||    
T  1903870 tttggtcccctaactttaaactgtctcaatttggtcccctaagtatacctccgtttatccaactggtc 1903937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 33459621 - 33459562
Alignment:
Q  353 attttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttac 412  Q
    |||||||||| |||| ||||||||||||| || | ||||||||||| | |||||||||||    
T  33459621 attttggtcctctaactataaagtgtctcaatttggtcccataagtcttcctccgtttac 33459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 379
Target Start/End: Original strand, 38778963 - 38779041
Alignment:
Q  302 attatttttggcttaatacatgctttggt-ccttaannnnnnnnnggattttattttggtcccctaattataaagtgtc 379  Q
    ||||||||||||||||||||||||||||| ||||||         | |||| ||||||||||||||| |||||||||||    
T  38778963 attatttttggcttaatacatgctttggtcccttaacatatttttgaatttcattttggtcccctaactataaagtgtc 38779041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 45721844 - 45721785
Alignment:
Q  353 attttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttac 412  Q
    ||||||||||||||| ||||||||||||| || | || |||||||| | |||||||||||    
T  45721844 attttggtcccctaactataaagtgtctcaatttggttccataagttttcctccgtttac 45721785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 19278384 - 19278434
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataa 396  Q
    |||||| ||||||||||| ||||||||||||||||| || | |||||||||    
T  19278384 ggatttcattttggtcccttaattataaagtgtctcaatttggtcccataa 19278434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 33228880 - 33228954
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| ||||||||||| ||||| |||| | |||| || | ||||||||| | |||||||||||||| ||||||||    
T  33228880 atttcattttggtcccttaattttaaactatctcaatttggtcccataattttacctccgtttacctaagtggtc 33228954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 40501538 - 40501464
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| ||||||||||| ||||| ||||  ||||| || | ||||||||| | |||||||||||||| ||||||||    
T  40501538 atttcattttggtcccttaattttaaaccgtctcaatttggtcccataactttacctccgtttacctaagtggtc 40501464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 41516422 - 41516364
Alignment:
Q  353 attttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgttta 411  Q
    ||||||||||||||| ||||||||||||  || | ||||||||||||| | ||||||||    
T  41516422 attttggtcccctaactataaagtgtcttaatttggtcccataagtattcttccgttta 41516364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 41618584 - 41618550
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtct 380  Q
    |||||| ||||||||||||||||||||||||||||    
T  41618584 ggatttcattttggtcccctaattataaagtgtct 41618550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 1904105 - 1904029
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||| | ||||||| ||||| | |||| |||||| || | ||||| ||||| ||| |||||||||||||||||||    
T  1904105 ggatttcaatttggtctcctaactttaaactgtctcaatttggtcccctaagtttacttccgtttacccaagtggtc 1904029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 46759196 - 46759252
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| ||||||| ||| ||| | ||| || ||||||||||||||||||||||||    
T  46759196 aaaaaatctggtgttaagtatgtataatagaagtatgttctctactttatctaatgg 46759252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 4554763 - 4554657
Alignment:
Q  150 tggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttccatactaaa 249  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||  || |||  ||||| |||||    ||||||||||||||| ||||||||||    
T  4554763 tggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaaa 4554664  T
Q  250 ccacacc 256  Q
    || ||||    
T  4554663 ccccacc 4554657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 19050780 - 19050856
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||| | ||||||||||||| | |||| |||||| || | ||||| |||||||||||||||||||||||||||||    
T  19050780 ggatttcaatttggtcccctaactttaaactgtctcaatttggtcccctaagtatacctccgtttacccaagtggtc 19050856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 8706125 - 8706049
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||| ||||||| ||||| | |||| |||||| || | ||||| ||||||||| |||||||||||||||||||    
T  8706125 ggattttaatttggtctcctaactttaaactgtctcaatgtggtcccctaagtatacttccgtttacccaagtggtc 8706049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 15154143 - 15154076
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||||| | |||| |||||| || | ||| | |||||||||||||||||||||||||||||    
T  15154143 tttggtcccctaactttaaactgtctcaatttggtcgcctaagtatacctccgtttacccaagtggtc 15154076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 641956 - 641889
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||||| | |||| |||||| || | ||||| |||||||||||| ||||||| ||||||||    
T  641956 tttggtcccctaactttaaactgtctcaatttggtcccctaagtatacctctgtttaccgaagtggtc 641889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 5975794 - 5975853
Alignment:
Q  353 attttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttac 412  Q
    ||||||||||||||||||||||||||||| || | ||| ||||||| | |||| ||||||    
T  5975794 attttggtcccctaattataaagtgtctcaatttggtctcataagtcttcctctgtttac 5975853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 15509226 - 15509261
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||| |||||||||||||    
T  15509226 ggattttattttggtcccctaactataaagtgtctc 15509261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 26711659 - 26711568
Alignment:
Q  166 tgataaaattatgttctctactttatctaatgg-ctaatatttactttcccatggattgaaacaattttccttttccatactaaaccacacc 256  Q
    |||||||||| ||||||||| || ||||| ||| |||| ||||||||||| |||    ||||||| |||||||| |||||||||||| ||||    
T  26711659 tgataaaattgtgttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26711568  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 26981396 - 26981305
Alignment:
Q  166 tgataaaattatgttctctactttatctaatgg-ctaatatttactttcccatggattgaaacaattttccttttccatactaaaccacacc 256  Q
    |||||||||| ||||||||| || ||||| ||| |||| ||||||||||| |||    ||||||| |||||||| |||||||||||| ||||    
T  26981396 tgataaaattgtgttctctaattgatctagtggtctaaaatttactttcctatgttgggaaacaactttcctttcccatactaaaccccacc 26981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 38394786 - 38394715
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtg 419  Q
    |||||| ||||||||||||| | |||| |||||| || | ||  | ||||||||||||||||||||||||||    
T  38394786 attttaatttggtcccctaactttaaactgtctcaatttagtttcctaagtatacctccgtttacccaagtg 38394715  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 32521718 - 32521752
Alignment:
Q  347 gattttattttggtcccctaattataaagtgtctc 381  Q
    ||||||||||||||||||||| |||||||||||||    
T  32521718 gattttattttggtcccctaactataaagtgtctc 32521752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 37371266 - 37371192
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| ||||||||||| ||| ||||||  ||||| || | ||||||||| | |||||||||||||| ||||||||    
T  37371266 atttcattttggtcccttaactataaaccgtctcaatttggtcccataactttacctccgtttacctaagtggtc 37371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 18693731 - 18693779
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataa 396  Q
    |||||||||||||||| ||| |||||| |||||| |||| |||||||||    
T  18693731 attttattttggtcccttaactataaaatgtctcaatctggtcccataa 18693779  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 31788209 - 31788324
Alignment:
Q  141 taaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttccttttc 240  Q
    |||||||| ||||||||||||| | || ||||| ||||||||||| |||||||||||| ||| ||| ||||||||||||   ||||||| ||  | || |    
T  31788209 taaaaaatctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttctcattcc 31788308  T
Q  241 catactaaaccacacc 256  Q
    ||||||||||| ||||    
T  31788309 catactaaacctcacc 31788324  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 14925276 - 14925371
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatggattgaaacaattttcctt 237  Q
    ||||||| ||||||||||||| | |||||||| ||||||||||| ||||||||||||  || |||  |||||||||||   ||||||| |||||||    
T  14925276 aaaaaatctggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattagctttcccatggtgggaaacaactttcctt 14925371  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 11469195 - 11469118
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    ||||||| ||||||||||||| | |||||||| |||||||||||| |||||||||||  || |||  |||||||||||    
T  11469195 aaaaaatctggtgttgagtgtctatgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatgg 11469118  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 11469699 - 11469755
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||    
T  11469699 aaaaaatctggtgttgaatgtctatgataaaagtatgttctctactttatctaatgg 11469755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 40135421 - 40135346
Alignment:
Q  347 gattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||| |||||||||| |||| | |||| |||||| || ||||| |||||||||||||  ||||||||||||||||    
T  40135421 gatttcattttggtcctctaactttaaaatgtctcaattttgtcacataagtatacctttgtttacccaagtggtc 40135346  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 412
Target Start/End: Complemental strand, 50679903 - 50679840
Alignment:
Q  349 ttttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttac 412  Q
    ||||||||||||||| ||| ||||||||||||| || | ||||||||||| | |||||||||||    
T  50679903 ttttattttggtcccttaactataaagtgtctcaatttggtcccataagtcttcctccgtttac 50679840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 20171245 - 20171171
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||||||||||| ||| | |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  20171245 attttattttggtcccttaactttaaactgtctcaatttggtcccataactttacctccgtttacctaagtggtc 20171171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 25866579 - 25866653
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||||||||||| ||| | |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  25866579 attttattttggtcccttaactttaaactgtctcaatttggtcccataactttacctccgtttacctaagtggtc 25866653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 27114716 - 27114790
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||||||||||| ||||| ||||  ||||| || | ||||||||| | |||||||||||||| ||||||||    
T  27114716 attttattttggtcccttaattttaaatcgtctcaatttggtcccataactttacctccgtttacctaagtggtc 27114790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 33941350 - 33941424
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||||||||||  |||||||||| |||||| || | |||| |||||||||| | ||||||||||| |||||    
T  33941350 attttattttggtcctttaattataaaatgtctcaatttggtcctataagtatacattcgtttacccaaatggtc 33941424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 31787592 - 31787536
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatgg 198  Q
    ||||||| || |||||||| | | |||||||| ||||||||||||||||||||||||    
T  31787592 aaaaaatctgatgttgagtctctatgataaaagtatgttctctactttatctaatgg 31787536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 38458117 - 38458193
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||| | ||||||||||||| | |||| |||||| || |  |||| ||||||||| |||||||||||||||||||    
T  38458117 ggatttcaatttggtcccctaactttaaattgtctcaatttgatcccctaagtatacttccgtttacccaagtggtc 38458193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 25035398 - 25035465
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||||| | |||| |||||| || | ||||| ||||||||| ||||||||||||| |||||    
T  25035398 tttggtcccctaactttaaattgtctcaatttggtcccctaagtatacttccgtttacccaaatggtc 25035465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 25040611 - 25040678
Alignment:
Q  355 tttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||||| | |||| |||||| || | ||||| ||||||||| ||||||||||||| |||||    
T  25040611 tttggtcccctaactttaaattgtctcaatttggtcccctaagtatacttccgtttacccaaatggtc 25040678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 26056232 - 26056182
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataa 396  Q
    |||||| ||||||||||||||| ||||||||||||| || | |||||||||    
T  26056232 ggatttcattttggtcccctaactataaagtgtctcaatttggtcccataa 26056182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 46280854 - 46280780
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||||||||||| ||||| ||||  ||||| || |  |||||||| | |||||||||||||| ||||||||    
T  46280854 attttattttggtcccttaattttaaaccgtctcaatttgatcccataactttacctccgtttacctaagtggtc 46280780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 47511400 - 47511474
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| |||||| |||| ||||| |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  47511400 atttcattttgatcccttaattttaaactgtctcaatttggtcccataactttacctccgtttacctaagtggtc 47511474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 1873937 - 1873904
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||| |||||||||||||    
T  1873937 attttattttggtcccctaactataaagtgtctc 1873904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 34532785 - 34532752
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||| |||||||||||||    
T  34532785 attttattttggtcccctaactataaagtgtctc 34532752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 48252967 - 48253030
Alignment:
Q  349 ttttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttac 412  Q
    ||||||||||||||||||| ||||||||||||| || | ||||||||||| | |||||||||||    
T  48252967 ttttattttggtcccctaactataaagtgtctcaatttggtcccataagtcttcctccgtttac 48253030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 7822114 - 7822036
Alignment:
Q  304 tatttttggcttaatacatgctttggtcc-ttaannnnnnnnnggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||| |||||||||||||||||||||| ||||         |||||||||||||||| |||||||||||||||||||    
T  7822114 tattttaggcttaatacatgctttggtcccttaacttaattttggattttattttggtctcctaattataaagtgtctc 7822036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 30431408 - 30431482
Alignment:
Q  348 attttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||| ||||||||||| ||||| |||| |||||| || | ||||||||| | |||||||||||||| ||||||||    
T  30431408 atttcattttggtcccttaattttaaactgtctcaatttggtcccataactttacctccgtttacctaagtggtc 30431482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 39190808 - 39190774
Alignment:
Q  347 gattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||||||||||||||||    
T  39190808 gattttattttggtcccctaattataaagtgtctc 39190774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 26798988 - 26798924
Alignment:
Q  349 ttttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacc 413  Q
    ||||||||||||||||||| |||||| |||||| || | ||||||||| | | ||||||||||||    
T  26798988 ttttattttggtcccctaactataaaatgtctcaatttggtcccataattcttcctccgtttacc 26798924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 53049122 - 53049087
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||| |||||||||||||    
T  53049122 ggattttattttggtcccctaactataaagtgtctc 53049087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 15450315 - 15450262
Alignment:
Q  166 tgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    |||||||| |||||||||||||| |||||||||  || ||| ||||||||||||    
T  15450315 tgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatgg 15450262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 38337411 - 38337488
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    ||||||| ||||||||||||| | |||||||| ||||||||||| || |||||| ||  || |||  |||||||||||    
T  38337411 aaaaaatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgg 38337488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 49287801 - 49287748
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaa 195  Q
    |||||||||||||||||| |||| |||||| | |||||||| ||||| ||||||    
T  49287801 aaaaaatttggtgttgagagtgtatgataagactatgttctatacttaatctaa 49287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 2224903 - 2224979
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    |||||||| ||||||||| ||| | |||  |||||| || | ||||| |||||||||||| |||||||||| |||||    
T  2224903 ggattttaatttggtcccttaactttaatctgtctcaatttggtcccctaagtatacctctgtttacccaactggtc 2224979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 12801 - 12870
Alignment:
Q  150 tggtgttgagtgtgtgtgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    ||||||||||||| | |||||||| ||||||||||| ||||||||||||  || ||| ||||||||||||    
T  12801 tggtgttgagtgtctatgataaaagtatgttctctagtttatctaatggtcaaaattaactttcccatgg 12870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 458545 - 458511
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtct 380  Q
    |||||||||||||||||||||||||||||||||||    
T  458545 ggattttattttggtcccctaattataaagtgtct 458511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 13173030 - 13173103
Alignment:
Q  309 ttggcttaatacatgctttggtcc-ttaannnnnnnnnggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||||| ||||         |||||||||||||||||||||| |||||||||||||    
T  13173030 ttggcttaatacatgctttggtcccttaacttattttcggattttattttggtcccctaactataaagtgtctc 13173103  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 2138722 - 2138687
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||| |||||||||||||    
T  2138722 ggattttattttggtcccctaactataaagtgtctc 2138687  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 26584122 - 26584087
Alignment:
Q  346 ggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||| |||||||||||||    
T  26584122 ggattttattttggtcccctaactataaagtgtctc 26584087  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 27763527 - 27763474
Alignment:
Q  142 aaaaaatttggtgttgagtgtgtgtgataaaattatgttctctactttatctaa 195  Q
    ||||||| ||||||||||||| | |||||||| ||||||||||| || ||||||    
T  27763527 aaaaaatctggtgttgagtgtctttgataaaaatatgttctctatttaatctaa 27763474  T

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Target: scaffold0177 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 1750 - 1821
Alignment:
Q  311 ggcttaatacatgctttggtcc-ttaannnnnnnnnggattttattttggtcccctaattataaagtgtctc 381  Q
    |||||||||||||||||||||| ||||         |||||| |||||||||||||||||||||||||||||    
T  1750 ggcttaatacatgctttggtcccttaacttattttcggatttcattttggtcccctaattataaagtgtctc 1821  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 11876 - 11929
Alignment:
Q  166 tgataaaattatgttctctactttatctaatggctaatatttactttcccatgg 219  Q
    |||||||| |||||||||||||| |||||||||  || ||| ||||||||||||    
T  11876 tgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatgg 11929  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 54625 - 54698
Alignment:
Q  349 ttttattttggtcccctaattataaagtgtctcgatcttgtcccataagtatacctccgtttacccaagtggtc 422  Q
    ||||||||||||||  ||||||||||||||||| || | ||||||||| | | |||| ||||||| | ||||||    
T  54625 ttttattttggtcctttaattataaagtgtctcaatttggtcccataaatcttcctctgtttaccaatgtggtc 54698  T

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