View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1285-Insertion-30 (Length: 930)
Name: NF1285-Insertion-30
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-30 |
 | |
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| [»] scaffold0277 (1 HSPs) |
| | |
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| [»] scaffold0038 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 724; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 13 - 905
Target Start/End: Original strand, 27216760 - 27217655
Alignment:
| Q |
13 |
ttcatgattctattgggttcctaagtcaacttcaaatcttgaatgctgcggattgtaacaagctaatgagttttcctcccttaaagttgaaatctctccg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
27216760 |
ttcatgattctattgggttcctaagtcaacttcaaatcttgaatgctgcggattgtaacaagctattgagttttcctcccttaaagttgaaatctcttcg |
27216859 |
T |
|
| Q |
113 |
taagttgaaactttccggttgtacaagtctcaagaaatttccagaaatattgggcaagatggaaaatatcaagaagattattttgagaaaaactggcata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27216860 |
taagttgaaactttccggttgtacaagtctcaagaaatttccagaaatattgggcaagatggaaaatatcaagaagattattttgagaaaaactggcata |
27216959 |
T |
|
| Q |
213 |
gaagaattgcccttttcatttaataatcttactggactcactgatttaactatagagggatgtggaatacttaagttgccaactagcattctcatgatgt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27216960 |
gaagaattgcccttttcatttaataatcttactagactcactgatttaactatagagggatgtggaatacttaagttgccaactagcattctcatgatgt |
27217059 |
T |
|
| Q |
313 |
caaatttgttcgaagttacggtttcgggttatactcagttattatcaaaacctgatgataaattgagttccacgttgtccgcaaatgtgaatgttcttcg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27217060 |
caaatttgttcgaagttacggtttcgggttatactcagttattatcaaaacctgatgataaattgagttccacgttgtccgcaaatgtgaatgttctttg |
27217159 |
T |
|
| Q |
413 |
ccttaatgcaagcaatgatgaatttctaacaatagctctgatgtggttttctaatgtggaaaccttacacctgtcgaatagcaatatcaaaattcttcct |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
27217160 |
ccttaatgcaagcaatgatgaatttctaacaatagctctgatgtggttttcgaatgttgaaaccttacacctgtcgggtagcaatattaaaattcttcct |
27217259 |
T |
|
| Q |
513 |
gaaagcctnnnnnnntgcctctctattaagtgcattgatttggatgattgtaaaactctagaagaaattagaggaattccgccaaatctagaagaattgt |
612 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27217260 |
gaaagcctaaaaaactgcctctctattaagtgcattgatttgtatggttgtggaactctagaagaaattagaggaattccgccaaatctagaagcattgt |
27217359 |
T |
|
| Q |
613 |
ctgcattgtggtgcaaatcactgacttcatcaagtaaaagaatgctaatgagtcaggtattgttattttatcttgcataaccatttgatttaatatgtca |
712 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27217360 |
ctgcattgcggtgcaaatcactaacttcatcaagtaaaagaatgctaatgagtcaggtattgttattttatcttgcataaccatttgatttaatatgtca |
27217459 |
T |
|
| Q |
713 |
tgattcaac--atatatagtttaa-ttatcttattgctaaaaacttacaggaattgcatgaggctggaagcatcgagtgttgttttccatcatcactaaa |
809 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
27217460 |
tgattcaacatatatatagtttaatttatcttattgctaaaaacttacaggagctgcatgagtctggaagcatcgagtgttgttttccatcaatactaaa |
27217559 |
T |
|
| Q |
810 |
tgagaggattcctgagtggtttgagtgccaaagaagagaatcgatttctttttcgttccgtaactacttcccttccttagttctcttattttcttc |
905 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||| || |||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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|
| T |
27217560 |
tgagagaattccagagtggtttgagcaccaaacaaacaaatcaatttctttttcgttccgtaacaacctcccttccttagttttcttattttcttc |
27217655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 13 - 912
Target Start/End: Original strand, 26813784 - 26814684
Alignment:
| Q |
13 |
ttcatgattctattgggttcctaagtcaacttcaaatcttgaatgctgcggattgtaacaagctaatgagttttcctcccttaaagttgaaatctctccg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
26813784 |
ttcatgattctattgggttcctaagtcaacttcaaatcttgaatgctgcggattgtaacaagctattgagttttcctcccttaaagttgaaatctcttcg |
26813883 |
T |
|
| Q |
113 |
taagttgaaactttccggttgtacaagtctcaagaaatttccagaaatattgggcaagatggaaaatatcaagaagattattttgagaaaaactggcata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26813884 |
taagttgaaactttccggttgtacaagtctcaagaaatttccagaaatattgggcaagatggaaaatatcaagaagattattttgcgaaaaactggcata |
26813983 |
T |
|
| Q |
213 |
gaagaattgcccttttcatttaataatcttactggactcactgatttaactatagagggatgtggaatacttaagttgccaactagcattctcatgatgt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
26813984 |
gaagaattgcccttttcatttaataatcttattggactaactgatttaactatagagggatgtggaaaacttagcttgccaagtagcattctcatgatgt |
26814083 |
T |
|
| Q |
313 |
caaatttgttcgaagttacggtttcgggttatactcagttattatcaaaacctgatgataaattgagttccacgttgtccgcaaatgtgaatgttcttcg |
412 |
Q |
| |
|
|||||||| |||||| | ||| ||||||| ||| |||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26814084 |
tgaatttgttggaagtttctatttttggttatagtcaactattgccaaaacagaatgataatttgagttccacgttgtcttcaaatgtgaatgttcttcg |
26814183 |
T |
|
| Q |
413 |
ccttaatgcaagcaatgatgaatttctaacaatagctctgatgtggttttctaatgtggaaaccttacacctgtcgaatagcaatatcaaaattcttcct |
512 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
26814184 |
ccttaatgcaagcaatcatgaatttctaacaatagctctgatgtggttttcaaatgttgaaaccttatacctgtcaggtagcaccatcaaaattcttcct |
26814283 |
T |
|
| Q |
513 |
gaaagcctnnnnnnntgcctctctattaagtgcattgatttggatgattgtaaaactctagaagaaattagaggaattccgccaaatctagaagaattgt |
612 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||| | ||||| |
|
|
| T |
26814284 |
gaaagcctaaaaaattgcctctctattaagtgcattgatttggatggttgcgaaactctagaagaaattaaagggattccgccaaatctaataacattgt |
26814383 |
T |
|
| Q |
613 |
ctgcattgtggtgcaaatcactgacttcatcaagtaaaagaatgctaatgagtcaggtattgttattttatcttgcataaccatttgatttaatatgtca |
712 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26814384 |
ctgcattgcggtgcaaatcattgacttcatcaagtaaaagcatgctaattagtcaggtattgttattttatcttgcataaccatttgatttaatatgtca |
26814483 |
T |
|
| Q |
713 |
tgattcaacatatatagtttaa-ttatcttattgctaaaaacttacaggaattgcatgaggctggaagcatcgagtgttgttttccatcatcactaaatg |
811 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || || |
|
|
| T |
26814484 |
taattcaacatatatagtttaatttatcttattgctaaaaacttacaggaattgcatttggctgggagcatcgagtgttgttttccatcatcaccaagtg |
26814583 |
T |
|
| Q |
812 |
agaggattcctgagtggtttgagtgccaaagaagagaatcgatttctttttcgttccgtaactacttcccttccttagttctcttattttcttccagagt |
911 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26814584 |
agaggactcctgagtggtttgagtaccaaagaagagaatcgatttctttttcgttccgtaacaacttcccttccttagttttcttattttcttccagagt |
26814683 |
T |
|
| Q |
912 |
g |
912 |
Q |
| |
|
| |
|
|
| T |
26814684 |
g |
26814684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 576 - 689
Target Start/End: Original strand, 28795205 - 28795317
Alignment:
| Q |
576 |
gaaattagaggaattccgccaaatctagaagaattgtctgcattgtggtgcaaatcactgacttcatcaagtaaaagaatgctaatgagtcaggtattgt |
675 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| | |||||| || | ||||||||| ||| ||| ||||||| |||||||||| |||||||||| |||| |
|
|
| T |
28795205 |
gaaattagagggattccaccaaatcttgaaaggctttctgcaatgggatgcaaatcattgagttcctcaagtagaagaatgctattgagtcaggt-ttgt |
28795303 |
T |
|
| Q |
676 |
tattttatcttgca |
689 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
28795304 |
tgttttatcttgca |
28795317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 28245625 - 28245672
Alignment:
| Q |
13 |
ttcatgattctattgggttcctaagtcaacttcaaatcttgaatgctg |
60 |
Q |
| |
|
||||||| ||| |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
28245625 |
ttcatgaatctgttgggttcctaaataaacttcaaatcttgaatgctg |
28245672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 576 - 689
Target Start/End: Complemental strand, 2055 - 1943
Alignment:
| Q |
576 |
gaaattagaggaattccgccaaatctagaagaattgtctgcattgtggtgcaaatcactgacttcatcaagtaaaagaatgctaatgagtcaggtattgt |
675 |
Q |
| |
|
||||||||||| ||||| |||||||| ||| | |||||| || | ||||||||| ||| ||| ||||||| |||||||||| |||||||||| |||| |
|
|
| T |
2055 |
gaaattagagggattccaccaaatcttgaaatgctttctgcaatgggatgcaaatcattgagttcttcaagtagaagaatgctattgagtcaggt-ttgt |
1957 |
T |
|
| Q |
676 |
tattttatcttgca |
689 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
1956 |
tgttttatcttgca |
1943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 45787 - 45834
Alignment:
| Q |
13 |
ttcatgattctattgggttcctaagtcaacttcaaatcttgaatgctg |
60 |
Q |
| |
|
||||||| ||| |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
45787 |
ttcatgaatctgttgggttcctaaataaacttcaaatcttgaatgctg |
45834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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