View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-31 (Length: 892)
Name: NF1285-Insertion-31
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-31 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 189 - 892
Target Start/End: Original strand, 33444207 - 33444914
Alignment:
| Q |
189 |
gtactaaggttaatttggttgtgttgacaaggatgctactggagttcctgctcttgttgatttggcttctatgagggatgccatgaagaatcttggtggt |
288 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33444207 |
gtactaaggttaatttgtttgtgttgacaaggatgctactggagttcctgctcttgttgatttggcttctatgagggatgccatgaagaatcttggtggt |
33444306 |
T |
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| Q |
289 |
gatcctaacaagattagccctttggtttgttcttcatgttcttatgataaatgcattgaaattttttaggtgaataattgacttagtttccagaaatgta |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
33444307 |
gatcctaacaagattagccctttggtttgttcttcatgttcttatgataaatgcattgaatttttttaggtgaataattgatttagtttccagaaatgtg |
33444406 |
T |
|
| Q |
389 |
ggaaaagacgttgtttttggtttggaagagcctaagggcgaaactcacacatattaagtgctgagaagtggaaaattgcgggttcaaacccacatcccag |
488 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33444407 |
ggaaaagatgttgtttttggtttggaagagcctaagggcgaaactcacacatattaagtgctgagaagtggaaaattgtgggttcaaacccacatcccag |
33444506 |
T |
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| Q |
489 |
aatatcaaatgtc---ttatagctacttaaccgagctgtattcacatgaaataagaatggacaatttagtccattaaatcttcgataacataatttgaga |
585 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33444507 |
aatatcaaatgtctaattatagctacttaaccgagctgtattcacatgaaataagaatggacaatttagtccattaaatcttcgataacataatttgaga |
33444606 |
T |
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| Q |
586 |
ctaattgacagactcaaaaggactaatgtttttcaaatattcttttgaaatttcgttaattttggagaccaaattactcaaccctaagccgttgaatgtg |
685 |
Q |
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| T |
33444607 |
ctaattgacagactcaaaaggactaatgtttttcaaatattcttttgaaatttcgttaattttggaaaccaaattactcaaccctaagccgttgaatgtg |
33444706 |
T |
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| Q |
686 |
tgatttccatctaacannnnnnnagaaaagcttagtgaagtctcctacggttactatgatcaattgtcggaattaagttgaaaattttggacttactgca |
785 |
Q |
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| T |
33444707 |
tgatttccatctaacattttcttagaaaagcttagtgaagtctcctatggttactatgatcaattgtcgggattaagttgaaaattttggacttactgca |
33444806 |
T |
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| Q |
786 |
tgtaggttccagtggaacttgttatagatcattcagttca-gttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaag |
884 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33444807 |
tgtaggttccagtggaacttgttatagatcattcggttcaggttgatgtagcaagatcagagaatgcagtacaagcaaatgtagaatttgagttccaaag |
33444906 |
T |
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| Q |
885 |
gaataaag |
892 |
Q |
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|||||||| |
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| T |
33444907 |
gaataaag |
33444914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 33444025 - 33444140
Alignment:
| Q |
8 |
acaacttcaa-gtgactcagaatgatgttgaaaatattattgattgggagaacacttctcaaaaccaaactgaaattcctttcatgcctgctcgtgttct |
106 |
Q |
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| T |
33444025 |
acaacttcaaagtgactcagaatgatgttgaaaatattattgattgggagaacacatctcaaaaccaaactgaaattcctttcatgcctgctcgtgttct |
33444124 |
T |
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| Q |
107 |
gttgcaggtttgttcc |
122 |
Q |
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| T |
33444125 |
cttgcaggtttgttcc |
33444140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 2229712 - 2229777
Alignment:
| Q |
230 |
gagttcctgctcttgttgatttggcttctatgagggatgccatgaagaatcttggtggtgatccta |
295 |
Q |
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| T |
2229712 |
gagttcctgctctttttgatcttgcttctatgagagatgctatgaagaatcttggtggtgatccta |
2229777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 502
Target Start/End: Original strand, 49014377 - 49014454
Alignment:
| Q |
425 |
ggcgaaactcacacatattaagtgctgagaagtggaaaattgcgggttcaaacccacatcccagaatatcaaatgtct |
502 |
Q |
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| T |
49014377 |
ggcgaaactcacacaccttaagtgctaagaagtggagagctgcggattcaaaccaacaccacagcatatcaaatgtct |
49014454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 2229602 - 2229644
Alignment:
| Q |
80 |
aattcctttcatgcctgctcgtgttctgttgcaggtttgttcc |
122 |
Q |
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| T |
2229602 |
aattcctctcatgcctgctcatgttctggtgcaggtttgttcc |
2229644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 35194967 - 35195020
Alignment:
| Q |
447 |
tgctgagaagtggaaaattgcgggttcaaacccacatcccagaatatcaaatgt |
500 |
Q |
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| T |
35194967 |
tgctgagaagtggagaattacgggttcaaaccctcaccccaacatatcaaatgt |
35195020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 40561051 - 40560964
Alignment:
| Q |
201 |
atttggttgtgttgacaaggatgctactggagttcctgctcttgttgatttggcttctatgagggatgccatgaagaatcttggtggt |
288 |
Q |
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||||||| ||| ||||||||||||||||| | || ||| |||||||||| | |||||||||||||| ||| ||||| |||| ||||| |
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| T |
40561051 |
atttggtagtgctgacaaggatgctactgcattttctgttcttgttgatgtaacttctatgagggattccacgaagattctttgtggt |
40560964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 17043175 - 17043090
Alignment:
| Q |
30 |
gatgttgaaaatattattgattgggagaacacttctcaaaaccaaactgaaattcctttcatgcctgctcgtgttctgttgcaggt |
115 |
Q |
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| T |
17043175 |
gatgttgagaagattattgactgggaaaacacttctactaaacaagttgaaattccattcaagcctgctcgtgttctcttgcaggt |
17043090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 854
Target Start/End: Complemental strand, 28311485 - 28311442
Alignment:
| Q |
812 |
gatcattcagttca-gttgatgtagcaagatcagagaatgcagt |
854 |
Q |
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| T |
28311485 |
gatcattcagttcaagttgatgtagcaaggtcagagaatgcagt |
28311442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 854
Target Start/End: Original strand, 37233709 - 37233752
Alignment:
| Q |
812 |
gatcattcagttca-gttgatgtagcaagatcagagaatgcagt |
854 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
37233709 |
gatcattcagttcaagttgatgtagcaaggtcagagaatgcagt |
37233752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 13986633 - 13986686
Alignment:
| Q |
425 |
ggcgaaactcacacatattaagtgctgagaagtggaaaattgcgggttcaaacc |
478 |
Q |
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||||||| ||||||| ||||| |||||||||||||| ||||| || |||||||| |
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| T |
13986633 |
ggcgaaattcacacacattaaatgctgagaagtggataattgtggattcaaacc |
13986686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 13992531 - 13992584
Alignment:
| Q |
425 |
ggcgaaactcacacatattaagtgctgagaagtggaaaattgcgggttcaaacc |
478 |
Q |
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| T |
13992531 |
ggcgaaattcacacacattaaatgctgagaagtggataattgtggattcaaacc |
13992584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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