View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1285-Insertion-4 (Length: 675)

Name: NF1285-Insertion-4
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1285-Insertion-4
NF1285-Insertion-4
[»] chr5 (14 HSPs)
chr5 (8-675)||(36227374-36228044)
chr5 (216-330)||(29925767-29925881)
chr5 (216-329)||(16458009-16458121)
chr5 (220-327)||(25461681-25461787)
chr5 (263-343)||(42500302-42500382)
chr5 (216-293)||(16937913-16937990)
chr5 (212-277)||(17652240-17652305)
chr5 (216-329)||(25461019-25461131)
chr5 (216-293)||(34102344-34102421)
chr5 (238-310)||(14932236-14932307)
chr5 (270-329)||(15015778-15015837)
chr5 (281-330)||(7999132-7999181)
chr5 (216-256)||(32009692-32009732)
chr5 (259-319)||(35445992-35446052)
[»] chr2 (17 HSPs)
chr2 (216-330)||(32592513-32592626)
chr2 (216-320)||(43279559-43279661)
chr2 (220-302)||(24100880-24100963)
chr2 (216-328)||(20933683-20933795)
chr2 (216-328)||(26201956-26202068)
chr2 (248-306)||(42420356-42420414)
chr2 (216-328)||(23974522-23974632)
chr2 (216-322)||(12289730-12289837)
chr2 (260-306)||(1875076-1875122)
chr2 (217-302)||(39659540-39659625)
chr2 (281-329)||(15305584-15305632)
chr2 (216-303)||(11201412-11201499)
chr2 (216-322)||(12194885-12194992)
chr2 (216-306)||(4026767-4026857)
chr2 (223-293)||(39073726-39073796)
chr2 (216-277)||(40279176-40279237)
chr2 (216-256)||(20952355-20952395)
[»] chr3 (23 HSPs)
chr3 (219-328)||(12862281-12862389)
chr3 (216-305)||(49034293-49034382)
chr3 (216-329)||(20880404-20880516)
chr3 (265-329)||(51929439-51929504)
chr3 (219-327)||(30956659-30956767)
chr3 (219-327)||(30972471-30972579)
chr3 (216-328)||(39980657-39980769)
chr3 (216-327)||(36631081-36631192)
chr3 (223-328)||(5331222-5331326)
chr3 (223-328)||(29520516-29520620)
chr3 (215-330)||(18405860-18405976)
chr3 (242-330)||(20170449-20170537)
chr3 (216-306)||(901874-901964)
chr3 (216-294)||(36189528-36189606)
chr3 (216-257)||(36887503-36887544)
chr3 (265-329)||(35696187-35696251)
chr3 (281-330)||(1508675-1508725)
chr3 (216-330)||(13715602-13715718)
chr3 (232-306)||(24684869-24684943)
chr3 (216-278)||(47132309-47132371)
chr3 (216-277)||(30443872-30443933)
chr3 (216-256)||(4526398-4526438)
chr3 (270-326)||(29520415-29520470)
[»] chr4 (21 HSPs)
chr4 (225-329)||(31076425-31076529)
chr4 (216-328)||(54069447-54069559)
chr4 (220-315)||(44797827-44797922)
chr4 (216-343)||(54425958-54426083)
chr4 (265-328)||(43505884-43505947)
chr4 (216-327)||(50681119-50681230)
chr4 (216-330)||(33586985-33587098)
chr4 (231-343)||(42404043-42404155)
chr4 (216-306)||(21731686-21731773)
chr4 (216-295)||(39691173-39691252)
chr4 (237-328)||(41336689-41336779)
chr4 (216-306)||(11347728-11347818)
chr4 (216-326)||(15177232-15177342)
chr4 (216-306)||(17884018-17884108)
chr4 (261-327)||(25904285-25904351)
chr4 (210-330)||(40831053-40831179)
chr4 (265-330)||(403453-403518)
chr4 (216-305)||(9760391-9760480)
chr4 (260-328)||(45935294-45935362)
chr4 (216-306)||(46592239-46592330)
chr4 (216-277)||(53294144-53294205)
[»] chr7 (24 HSPs)
chr7 (216-327)||(420289-420400)
chr7 (216-327)||(38138509-38138620)
chr7 (217-330)||(48469970-48470083)
chr7 (216-328)||(31744237-31744349)
chr7 (223-328)||(45806514-45806619)
chr7 (216-327)||(4970823-4970929)
chr7 (535-596)||(26779372-26779433)
chr7 (216-321)||(45338384-45338488)
chr7 (281-330)||(48140142-48140191)
chr7 (270-322)||(45806410-45806462)
chr7 (260-323)||(31247602-31247665)
chr7 (216-318)||(19022615-19022717)
chr7 (262-329)||(20234408-20234477)
chr7 (286-328)||(21568728-21568770)
chr7 (283-324)||(31247666-31247707)
chr7 (216-277)||(43694600-43694661)
chr7 (216-277)||(46280302-46280363)
chr7 (281-328)||(23989579-23989626)
chr7 (237-315)||(19302610-19302688)
chr7 (260-330)||(46078073-46078143)
chr7 (216-305)||(20269527-20269616)
chr7 (281-322)||(45004700-45004741)
chr7 (282-330)||(9210554-9210602)
chr7 (216-256)||(19214436-19214476)
[»] chr6 (8 HSPs)
chr6 (223-328)||(18076124-18076229)
chr6 (265-329)||(30536637-30536701)
chr6 (216-327)||(8201162-8201273)
chr6 (260-329)||(30536405-30536474)
chr6 (237-329)||(24626222-24626314)
chr6 (216-329)||(31623487-31623600)
chr6 (213-277)||(415283-415347)
chr6 (230-306)||(8147652-8147728)
[»] chr1 (28 HSPs)
chr1 (210-330)||(18556853-18556972)
chr1 (216-306)||(41184680-41184770)
chr1 (216-329)||(42174784-42174895)
chr1 (244-329)||(42391293-42391377)
chr1 (262-321)||(45661185-45661244)
chr1 (231-329)||(14385808-14385906)
chr1 (216-277)||(3234045-3234106)
chr1 (216-328)||(44931962-44932074)
chr1 (216-343)||(17603414-17603544)
chr1 (216-306)||(33835484-33835574)
chr1 (216-306)||(33914038-33914128)
chr1 (260-306)||(45145176-45145222)
chr1 (298-343)||(32491466-32491511)
chr1 (216-328)||(1510340-1510451)
chr1 (213-328)||(27976523-27976639)
chr1 (231-327)||(37517239-37517335)
chr1 (218-277)||(6556950-6557009)
chr1 (216-319)||(47432033-47432135)
chr1 (216-322)||(33546483-33546589)
chr1 (216-306)||(34795455-34795545)
chr1 (237-306)||(836390-836459)
chr1 (247-316)||(5063403-5063472)
chr1 (216-330)||(11893122-11893238)
chr1 (283-328)||(37473327-37473372)
chr1 (237-306)||(38882962-38883030)
chr1 (216-256)||(26779955-26779995)
chr1 (216-256)||(36872732-36872772)
chr1 (216-256)||(49938747-49938787)
[»] chr8 (20 HSPs)
chr8 (216-343)||(16825567-16825694)
chr8 (212-330)||(12976139-12976257)
chr8 (232-330)||(38750284-38750382)
chr8 (216-321)||(6525753-6525857)
chr8 (260-330)||(35644055-35644125)
chr8 (264-328)||(14956373-14956437)
chr8 (281-329)||(32975987-32976035)
chr8 (237-328)||(42043396-42043487)
chr8 (260-327)||(12497305-12497372)
chr8 (216-306)||(16736034-16736124)
chr8 (216-293)||(37945560-37945636)
chr8 (281-330)||(38353276-38353324)
chr8 (231-327)||(10758301-10758397)
chr8 (210-253)||(28763371-28763414)
chr8 (222-343)||(25930590-25930712)
chr8 (281-330)||(1058169-1058218)
chr8 (216-328)||(15180469-15180581)
chr8 (281-329)||(29168147-29168195)
chr8 (216-256)||(29818944-29818984)
chr8 (216-256)||(30657802-30657842)


Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 8 - 675
Target Start/End: Complemental strand, 36228044 - 36227374
Alignment:
Q  8 cttcaatggtagaagtgtttgccaatagttccattcatgattttaccgagcttaattccttgttaaacacttcaacttgtaactaagtgattggcctctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36228044 cttcaatggtagaagtgtttgccaatagttccattcatgattttaccgagcttaattccttgttaaacacttcaacttgtaactaagtgattggcctctg 36227945  T
Q  108 tcgttaatgagctgcaattaaggacaaatccttcaggacgaattgagttcaaacttttgaaaacagcttatgagttatgacaatttcataagnnnnnnnn 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||            
T  36227944 tggttaatgagctgcaattaaggacaaatccttcaggacgaattgagttcaaacttttgaacacagcttatgagttatgacaatttcataagtttttttt 36227845  T
Q  208 nn-aacttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
       |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36227844 tttaacttatttcataagttcttcaatatagcttataaaagcaacttatattgtatacaaaatcaatttaacgctattttatcttttgctataaaaatag 36227745  T
Q  307 attaagcaagcttatacataagcggctgtgctataagttgatgatccaaacactcccttaatgcttgtaatggttaagattcttgt--ttattgttctcg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  36227744 attaagcaagcttatacataagcggctgtgctataagttgatgatccaaacactcccttaatgcttgtaatggttaagattattgtgtttattgttctcg 36227645  T
Q  405 tcaaattctttatatttagaaaaatgagatgattatcatgaacttctaaattgatgatctgcttattcatgtgagtgatgttcatctaactatgtctgta 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36227644 tcaaattctttatatttagaaaaatgagatgattatcatgaacttctaaattgatgatctgcttattcatgtgagtgatgttcatctaactatgtctgta 36227545  T
Q  505 gccaagaatgtgaatgtgttggttggttaataatgtctaagatattttatgatttcggaactttgattttcttgtctatgacccataaaatgttcagttc 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36227544 gccaagaatgtgaatgtgttggttggttaataatgtctaagatattttatgatttcggaactttgattttcttgtctatgacgcataaaatgttcagttc 36227445  T
Q  605 tgaaataagaaaaacaacataagttatcttttccttcttctattgtgatgttttatttgtcttttgcttcc 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36227444 tgaaataagaaaaacaacataagttatcttttccttcttctattgtgatgttttatttgtcttttgcttcc 36227374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 29925881 - 29925767
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| ||||||  ||||||||||||    ||||| || |||||||| |||||||||||||||||||||||||||| ||| ||||    
T  29925881 tttcataagttctccaatatagcttatgtaaacaacttatagcacatacagaaacaatttaacgctattttatcttttgctataaaaatagcttatgcaa 29925782  T
Q  316 gcttatacataagcg 330  Q
    || ||||| ||||||    
T  29925781 gcatatacttaagcg 29925767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 16458009 - 16458121
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||| ||||||| |||| | ||| ||||||||||||||||   ||||||||| |||||||| | |||||||||||||||||||||||||| ||| ||||    
T  16458009 tttcacaagttctccaatttagctcataaaaacaacttatagcatatacaaaaacaatttaa-gttattttatcttttgctataaaaatagcttatgcaa 16458107  T
Q  316 gcttatacataagc 329  Q
    ||||||| ||||||    
T  16458108 gcttatatataagc 16458121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 25461681 - 25461787
Alignment:
Q  220 ataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagctt 319  Q
    ||||||||| |||||  ||||||||||||||||||||   ||||| ||| |||||||| | ||||| |||||||||||||||||||| ||| ||||||||    
T  25461681 ataagttctccaatagagcttataaaaacaacttataacatatactaaaccaatttaacgatattt-atcttttgctataaaaatagcttatgcaagctt 25461779  T
Q  320 atacataa 327  Q
    ||| ||||    
T  25461780 atatataa 25461787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 42500302 - 42500382
Alignment:
Q  263 acaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcggctgtgctataag 343  Q
    |||||| ||||||||   |||||||||||||| ||||||||||| ||| |||||||||||||| ||||  |||||||||||    
T  42500302 acaaaaacaatttaactttattttatcttttgatataaaaatagcttatgcaagcttatacattagcgcttgtgctataag 42500382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 16937913 - 16937990
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 293  Q
    |||| |||||||| |||||| || |||||||||||||||||   ||||||||| |||||||| | |||||||||||||    
T  16937913 tttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttattttatctttt 16937990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 17652305 - 17652240
Alignment:
Q  212 cttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    ||||||||||||||| ||||| || |||||| ||||||||||||| | ||||||||| ||||||||    
T  17652305 cttatttcataagttgttcaacatagcttatgaaaacaacttatagtatatacaaaagcaatttaa 17652240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 329
Target Start/End: Complemental strand, 25461131 - 25461019
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||| |||||| |||||  |||||| |||||||||||||   ||||||||| ||||  ||   || |||||||||||||| |||||||| ||| ||||    
T  25461131 tttcatcagttctccaatagagcttatgaaaacaacttataacatatacaaaaacaatacaacttta-tttatcttttgctagaaaaatagcttacgcaa 25461033  T
Q  316 gcttatacataagc 329  Q
    ||||||| ||||||    
T  25461032 gcttatatataagc 25461019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 34102344 - 34102421
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 293  Q
    |||||| |||||| ||| |||||||||||||||||||||||   ||||||||| ||| ||||   |||||||||||||    
T  34102344 tttcatgagttctccaacatggcttataaaaacaacttatagcatatacaaaaacaaattaacattattttatctttt 34102421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 14932307 - 14932236
Alignment:
Q  238 cttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagatta 310  Q
    ||||||| |||| ||||||   ||||||||| ||||||||   ||||||||||||||||||||||||||||||    
T  14932307 cttataacaacagcttatagcttatacaaaa-caatttaactttattttatcttttgctataaaaatagatta 14932236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 15015837 - 15015778
Alignment:
Q  270 caatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    |||||||| | ||||| | ||||||||| |||||||| ||| ||||||||||||||||||    
T  15015837 caatttaacgttatttcaccttttgctacaaaaatagcttatgcaagcttatacataagc 15015778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 7999181 - 7999132
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    ||||||| ||||||| |||||||||  ||| |||||||||||||||||||    
T  7999181 tattttaccttttgccataaaaataacttatgcaagcttatacataagcg 7999132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 32009732 - 32009692
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||||||| |||||| |||||||||||||| |||||    
T  32009732 tttcataagttctccaatatagcttataaaaacaatttata 32009692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 35446052 - 35445992
Alignment:
Q  259 gtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagctt 319  Q
    |||||||||| ||||||||   ||||||||| |||||||||||||||| ||| | ||||||    
T  35446052 gtatacaaaaacaatttaactttattttatcatttgctataaaaatagcttatgtaagctt 35445992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 32592626 - 32592513
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| ||||||||||||||||||||  |||||||||| ||||||||   ||||||||||||| |||||||||||| ||| ||||    
T  32592626 tttcataagttctccaatattgcttataaaaacaacttatagcgtatacaaaa-caatttaacattattttatctttttctataaaaatagtttatgcaa 32592528  T
Q  316 gcttatacataagcg 330  Q
    |||||||||||||||    
T  32592527 gcttatacataagcg 32592513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 43279559 - 43279661
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||| ||||||| |||||| ||||||||||||||||||||  | |||||||| |||||| |   |||||||||||||| ||||||||||| ||| ||||    
T  43279559 tttcacaagttctccaatatagcttataaaaacaacttata--gcatacaaaaacaatttcacattattttatcttttgatataaaaatagcttatgcaa 43279656  T
Q  316 gctta 320  Q
    |||||    
T  43279657 gctta 43279661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 24100963 - 24100880
Alignment:
Q  220 ataagttcttcaatatggcttataaaaacaacttatattgt-atacaaaatcaatttaatgctattttatcttttgctataaaa 302  Q
    |||||||||||||||| |||||| ||||||| ||||| | | |||||||||||| |||||| ||||||| ||||||||||||||    
T  24100963 ataagttcttcaatatagcttattaaaacaatttatagtattatacaaaatcaaattaatgttattttaccttttgctataaaa 24100880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 20933795 - 20933683
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||| | |||||| ||||| |||||||||||| |   |||| | || ||||||||   |||||||||||||| | ||||||||||||| ||||    
T  20933795 tttcataagttttccaatatagcttagaaaaacaacttagagcatatatagaagcaatttaacattattttatcttttgttgtaaaaatagattatgcaa 20933696  T
Q  316 gcttatacataag 328  Q
    || ||||||||||    
T  20933695 gcctatacataag 20933683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 26202068 - 26201956
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgta-tacaaaatcaatttaatgctattttatct-tttgctataaaaatagattaagc 313  Q
    ||||||||||||| ||||||  |||||||||||||||||||  | | ||| | | |||||||| | |||||||||| |||||||||||||||| ||| ||    
T  26202068 tttcataagttctccaatatatcttataaaaacaacttata--gcagtacgagaccaatttaacgttattttatctctttgctataaaaatagcttatgc 26201971  T
Q  314 aagcttatacataag 328  Q
    ||||||||| |||||    
T  26201970 aagcttatatataag 26201956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 42420356 - 42420414
Alignment:
Q  248 caacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||  ||||||||| |||||||| | ||||||||||||||||||||||||||    
T  42420356 caacttatatcatatacaaaaacaatttaacgttattttatcttttgctataaaaatag 42420414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 23974522 - 23974632
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||||||||||  ||||| |||||  |||| | ||||||  ||||| |||| ||||||||  ||||||| |||||| |||||||||||| ||||| ||    
T  23974522 tttcataagttctcaaatatagcttaagaaaaaagcttataacgtataaaaaagcaatttaa--ctattttgtctttttctataaaaatagcttaagtaa 23974619  T
Q  316 gcttatacataag 328  Q
    |||||| ||||||    
T  23974620 gcttatgcataag 23974632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 12289837 - 12289730
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtata-caaaatcaatttaatgctattttatcttttgctataaaaatagattaagca 314  Q
    ||||||||||||| ||||||   ||||||||||||||||||   | || ||||| ||||||||||  |||||||||||| || || ||| || |||||||    
T  12289837 tttcataagttctccaatataaattataaaaacaacttataacatgtaccaaaaacaatttaatgtcattttatcttttcctgtagaaacagcttaagca 12289738  T
Q  315 agcttata 322  Q
    ||||||||    
T  12289737 agcttata 12289730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 1875122 - 1875076
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||| |||||||||| |||||||||||||||||||| |||||    
T  1875122 tatacaaaagcaatttaatgttattttatcttttgctataacaatag 1875076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 302
Target Start/End: Original strand, 39659540 - 39659625
Alignment:
Q  217 ttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaa 302  Q
    ||||||||||||  ||||| |||||||||||||| |||||   || |||||| |||||||| | |||| ||||||||| |||||||    
T  39659540 ttcataagttctctaatatagcttataaaaacaagttataacatagacaaaaacaatttaacgttattgtatcttttgttataaaa 39659625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 15305632 - 15305584
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||| ||||    
T  15305632 tattttatcatttgctataaaaatagcttatgcaagcttatacacaagc 15305584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 11201412 - 11201499
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaa 303  Q
    ||||||||||||| |||||| |  || |||||||||||||| | ||||||||| |||||| |   |||||||||||||  ||||||||    
T  11201412 tttcataagttctccaatatagtatacaaaaacaacttatagtatatacaaaaacaattttaccttattttatcttttaatataaaaa 11201499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 12194992 - 12194885
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatac-aaaatcaatttaatgctattttatcttttgctataaaaatagattaagca 314  Q
    ||||| ||||||| ||||||  |||||| ||||||| ||||   ||||| |||| ||||| ||||  |||||||||||| ||||| ||| || |||||||    
T  12194992 tttcacaagttctccaatataacttatataaacaacctataacatataccaaaaacaattgaatgtcattttatcttttcctatagaaacagcttaagca 12194893  T
Q  315 agcttata 322  Q
    ||||||||    
T  12194892 agcttata 12194885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 4026857 - 4026767
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||||||||  ||   |||| |||||| |||||| | ||| |||||  |||||||   ||||||||||||||||||||||||||    
T  4026857 tttcataagttcttcaggataatttatgaaaacagcttataatttatgcaaaaataatttaactttattttatcttttgctataaaaatag 4026767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 39073726 - 39073796
Alignment:
Q  223 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 293  Q
    |||||| |||||| |||||||||||  |||||||   ||||||||| |||||||| | |||||||||||||    
T  39073726 agttctccaatatagcttataaaaattacttatagcatatacaaaaacaatttaacgttattttatctttt 39073796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 40279237 - 40279176
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    ||||||||||||| ||| || |||||| ||||||||||||||  ||||| ||| ||||||||    
T  40279237 tttcataagttctccaacatagcttatgaaaacaacttatatcttataccaaaacaatttaa 40279176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 20952395 - 20952355
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||||||| |||||| ||| ||||||||||||||||    
T  20952395 tttcataagttctccaatatagctaataaaaacaacttata 20952355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 219 - 328
Target Start/End: Original strand, 12862281 - 12862389
Alignment:
Q  219 cataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagct 318  Q
    |||||||||| |||||| |||||| |||||||||||||   ||||||||| ||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  12862281 cataagttctccaatatagcttatgaaaacaacttatagcatatacaaaa-caatttaaatctattttatcttttgctataaaaatagattatgcaagct 12862379  T
Q  319 tatacataag 328  Q
    || |||||||    
T  12862380 taaacataag 12862389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 49034293 - 49034382
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaata 305  Q
    ||||| ||||||| |||||| ||||||||||||||||||||   ||| || || |||||||| | |||||||||||||||||||||||||    
T  49034293 tttcagaagttctccaatatagcttataaaaacaacttatagcatatgcacaaacaatttaacggtattttatcttttgctataaaaata 49034382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 329
Target Start/End: Complemental strand, 20880516 - 20880404
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| |||| ||||||||  |||||   ||||||||| ||||||||   | ||||||| |||||||||||||||| ||| | ||    
T  20880516 tttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaatttaact-tgttttatcatttgctataaaaatagcttatgtaa 20880418  T
Q  316 gcttatacataagc 329  Q
    ||||||||||||||    
T  20880417 gcttatacataagc 20880404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 51929439 - 51929504
Alignment:
Q  265 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagc-aagcttatacataagc 329  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||    
T  51929439 aaaaacaatttaatgctattttatcttttgctataaaaatatcttatgcaaagcttatacataagc 51929504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 30956659 - 30956767
Alignment:
Q  219 cataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagct 318  Q
    |||||||||| ||| || |||| | |||||||||||||   ||||||||| ||||||||   ||||||||||||||||||| |||||| ||| | |||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagct 30956758  T
Q  319 tatacataa 327  Q
    ||| |||||    
T  30956759 tatgcataa 30956767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 219 - 327
Target Start/End: Original strand, 30972471 - 30972579
Alignment:
Q  219 cataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagct 318  Q
    |||||||||| ||| || |||| | |||||||||||||   ||||||||| ||||||||   ||||||||||||||||||| |||||| ||| | |||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagct 30972570  T
Q  319 tatacataa 327  Q
    ||| |||||    
T  30972571 tatgcataa 30972579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 39980769 - 39980657
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| ||||||||||||||||||||   | | ||||| |||||||| | |||| ||| || ||||||||||| || | | ||||    
T  39980769 tttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaatttaacgttattgtatgttctgctataaaaaaagctaatgcaa 39980670  T
Q  316 gcttatacataag 328  Q
     ||||||||||||    
T  39980669 acttatacataag 39980657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 36631081 - 36631192
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| ||| ||||||||||||||||   | ||||||| ||||||||   || |||||| ||| ||||| |||||| |||||| |    
T  36631081 tttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaactttactttatcctttactatagaaatagcttaagcga 36631180  T
Q  316 gcttatacataa 327  Q
    | ||||||||||    
T  36631181 gtttatacataa 36631192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 5331326 - 5331222
Alignment:
Q  223 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 322  Q
    ||||||||||| | ||||||||||||||||||||     || || | |||||||| | |||||| ||||||||||||||| ||| ||| |||||||||||    
T  5331326 agttcttcaatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctataaaa-tagcttatgcaagcttata 5331228  T
Q  323 cataag 328  Q
    ||||||    
T  5331227 cataag 5331222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 29520516 - 29520620
Alignment:
Q  223 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 322  Q
    ||||||||||| | ||||||||||||||||||||     || || | |||||||| | |||||| ||||||||||| ||||||| ||| |||||||||||    
T  29520516 agttcttcaatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctat-aaaatagcttatgcaagcttata 29520614  T
Q  323 cataag 328  Q
    ||||||    
T  29520615 cataag 29520620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 330
Target Start/End: Original strand, 18405860 - 18405976
Alignment:
Q  215 atttcataagttcttcaatatggcttataaaaacaacttatattgtatac-aaaatcaatttaatgctattttatcttttgctataaaaatagattaagc 313  Q
    |||||||||||||| ||| || |||||| |||||||||||||   ||||| ||||  |||| || | ||||||||||||| ||||| |||||  ||| |     
T  18405860 atttcataagttctccaagatagcttatgaaaacaacttatagcatatacaaaaaaaaattcaacgatattttatcttttcctatataaataacttatgt 18405959  T
Q  314 aagcttatacataagcg 330  Q
    |||||||||||||||||    
T  18405960 aagcttatacataagcg 18405976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 20170537 - 20170449
Alignment:
Q  242 taaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    |||||||||||||||   ||||||||| ||||||||   |||||||||||||||  ||||||||| ||  ||||||| |||||||||||    
T  20170537 taaaaacaacttatagcatatacaaaaacaatttaacattattttatcttttgcagtaaaaatagcttgtgcaagctgatacataagcg 20170449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 901964 - 901874
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||||| |||||| ||||||||||||||  ||||   |||| ||||  ||| ||||| ||||||||||||||||  ||||||||    
T  901964 tttcataagttctccaatatagcttataaaaacaaagtataacatatataaaaataatataatgttattttatcttttgctcgaaaaatag 901874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 36189606 - 36189528
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttg 294  Q
    ||||||||||||| ||||||  |||||||||| | |||||||  ||||||||| ||||||||   ||||||||||||||    
T  36189606 tttcataagttctccaatatatcttataaaaatagcttatatcatatacaaaaacaatttaactttattttatcttttg 36189528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 36887544 - 36887503
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatat 257  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  36887544 tttcataagttcttcaagatggcttatgaaaacaacttatat 36887503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 35696251 - 35696187
Alignment:
Q  265 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    |||| |||||||||| || ||||||||||||||||||||||| ||| ||||| | ||||| ||||    
T  35696251 aaaaacaatttaatgttagtttatcttttgctataaaaatagcttacgcaagttcatacaaaagc 35696187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 1508675 - 1508725
Alignment:
Q  281 tattttatcttttgctataaaaa-tagattaagcaagcttatacataagcg 330  Q
    |||||||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  1508675 tattttatcttttgctttaaaaaatagtttatgcaagcttatacataagcg 1508725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 13715602 - 13715718
Alignment:
Q  216 tttcataagttcttcaatatggcttata--aaaacaacttatattgtatacaaaatc-aatttaatgctattttatcttttgctataaaaatagattaag 312  Q
    ||||||||||| | |||||| |||||||  ||||||||||||||  ||||||||||| |||| |||| ||||||| |||| | | |||||| || ||| |    
T  13715602 tttcataagttgtccaatatcgcttatataaaaacaacttatatcatatacaaaatcaaattaaatgttattttaactttcgatctaaaaaaagcttacg 13715701  T
Q  313 caagcttatacataagcg 330  Q
    | |||| |||||||||||    
T  13715702 c-agctaatacataagcg 13715718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 24684869 - 24684943
Alignment:
Q  232 atatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    |||| |||||||||| |||||||||   ||||||||| ||||| ||   ||||||||||||| ||||||||||||    
T  24684869 atattgcttataaaagcaacttatagcatatacaaaaacaattaaaatttattttatctttttctataaaaatag 24684943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 47132371 - 47132309
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaat 278  Q
    |||||||| |||| |||||| ||||||||||||||| ||||   ||||||||| |||||||||    
T  47132371 tttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaatttaat 47132309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 30443933 - 30443872
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    ||||||||||||| |||||| | ||||||||||| ||||||   ||||||||| ||||||||    
T  30443933 tttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaa 30443872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 4526398 - 4526438
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  4526398 tttcataagttcttcaaaataacttataaaaacaacttata 4526438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 29520415 - 29520470
Alignment:
Q  270 caatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacata 326  Q
    |||||||| | ||| |||||||||||| ||||||||| ||| |||||||||||||||    
T  29520415 caatttaacgttatgttatcttttgct-taaaaatagcttatgcaagcttatacata 29520470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 31076425 - 31076529
Alignment:
Q  225 ttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttataca 324  Q
    ||||||||||| |||||||||||||| |||||   ||||||||| || |||||   |||||||||||||||| ||||||||| ||| |||||||||||||    
T  31076425 ttcttcaatatagcttataaaaacaatttatagcatatacaaaaacagtttaaacttattttatcttttgctctaaaaatagcttatgcaagcttataca 31076524  T
Q  325 taagc 329  Q
    |||||    
T  31076525 taagc 31076529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 54069447 - 54069559
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||| ||||||||||||  ||||||||||||| |||||   ||||||||| ||||||||   |||||||||||||| |||||||||||  || ||||    
T  54069447 tttcatatgttcttcaatataacttataaaaacaaattatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatagcatatgcaa 54069546  T
Q  316 gcttatacataag 328  Q
    |||||||||||||    
T  54069547 gcttatacataag 54069559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 44797922 - 44797827
Alignment:
Q  220 ataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||| ||| |||||  ||||||||||||||||||||  ||| ||||||||||||||| | | |||||||||||||||||||||||| ||| ||||    
T  44797922 ataagctctccaatacagcttataaaaacaacttatagcgtacacaaaatcaatttaacgttgttttatcttttgctataaaaatagcttatgcaa 44797827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 54426083 - 54425958
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| | ||||||||||||||||||   |||| |||  ||||||| || ||||||||||  ||||| |||| ||| ||| ||||    
T  54426083 tttcataagttctccaatatagattataaaaacaacttataacatatataaa--caatttagtgttattttatctgctgctacaaaagtagcttatgcaa 54425986  T
Q  316 gcttatacataagcggctgtgctataag 343  Q
    |||||||||||||||  |||| ||||||    
T  54425985 gcttatacataagcgcttgtgatataag 54425958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 43505947 - 43505884
Alignment:
Q  265 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    |||| |||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  43505947 aaaaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataag 43505884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 50681119 - 50681230
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||||| |||| |||||| ||||||| ||||||||||||   ||||||||| ||||||||   ||||||||||| | |||||||||||| ||  | ||    
T  50681119 tttcataatttctccaatatagcttatataaacaacttatagcatatacaaaaacaatttaacattattttatcttatcctataaaaatagcttttgtaa 50681218  T
Q  316 gcttatacataa 327  Q
    ||||||||||||    
T  50681219 gcttatacataa 50681230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 33586985 - 33587098
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| | |||| ||||||||||||||| ||||   ||||||||| |  || || | | |||||||||| ||||||||||||| ||| ||||    
T  33586985 tttcataagttctccgatatagcttataaaaacaacctataacatatacaaaaacg-ttcaacgttgttttatctttcgctataaaaatagcttatgcaa 33587083  T
Q  316 gcttatacataagcg 330  Q
    |||||||||||||||    
T  33587084 gcttatacataagcg 33587098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 231 - 343
Target Start/End: Original strand, 42404043 - 42404155
Alignment:
Q  231 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    ||||||||||||||||||| |||| |   | ||||||| ||||||||   ||||||||||||||||||||||| ||  || |||| |||||||||||| |    
T  42404043 aatatggcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagcgtatgcaaacttatacataagtg 42404142  T
Q  331 gctgtgctataag 343  Q
      |||||||||||    
T  42404143 cttgtgctataag 42404155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 21731686 - 21731773
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    |||||||| |||| |||||| ||||||||||||||||||||    |||||||| |||   |||| || |||||||||||||||||||||||    
T  21731686 tttcataaattctccaatatagcttataaaaacaacttatagcacatacaaaaacaa---aatgttactttatcttttgctataaaaatag 21731773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 39691173 - 39691252
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgc 295  Q
    |||| ||||||||||||||| ||||||||||||||||||||   |||||||||  | |||||   |||||||||||||||    
T  39691173 tttcgtaagttcttcaatatagcttataaaaacaacttatagcatatacaaaacaattttaacattattttatcttttgc 39691252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 41336779 - 41336689
Alignment:
Q  237 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    ||||| |||||||| |||||   ||||||||| ||||||||   |||||||||||| ||||||||||||| ||| |||||| ||||||||||    
T  41336779 gcttagaaaaacaatttataacatatacaaaaacaatttaactttattttatcttt-gctataaaaatagcttatgcaagcctatacataag 41336689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 11347818 - 11347728
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||||| | |||   |||||||||| |||||||| | |||||||||   || ||| | ||||||||||||||||||||||||||    
T  11347818 tttcataagttctccgataaatcttataaaaataacttatagtatatacaaaaatgatctaaagttattttatcttttgctataaaaatag 11347728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 15177232 - 15177342
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||| ||||||  | ||| |||||||||||| |||||||    ||| || | |||||||| | |||||||||||| ||||| ||||||| ||| ||||    
T  15177232 tttcattagttctctagtatagcttataaaaaccacttatagcacatagaagaacaatttaacgttattttatctttagctattaaaatagcttatgcaa 15177331  T
Q  316 gcttatacata 326  Q
    |||||||||||    
T  15177332 gcttatacata 15177342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 17884108 - 17884018
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||| ||| |||||| |||||| ||||||||| |||   ||||||||| ||||||||   |||||||||||||| |||| ||||||    
T  17884108 tttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatcttttgttatagaaatag 17884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 25904285 - 25904351
Alignment:
Q  261 atacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 327  Q
    |||||||||||||||||   |||||||||||||||| ||||||||| ||| | ||||||||| ||||    
T  25904285 atacaaaatcaatttaactttattttatcttttgctgtaaaaatagcttatgtaagcttatatataa 25904351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 40831053 - 40831179
Alignment:
Q  210 aacttatttcataagttcttcaatatggcttataaaaacaacttat-----attgt-atacaaaatcaatttaatgctattttatcttttgctataaaaa 303  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||     || || |||||||| |||||||  |  |||| |||||||||||| |||     
T  40831053 aacttatttcataagttctccaatctagcttataaaaacaacttattgcaaatagtaatacaaaaccaatttagcgtcatttcatcttttgctattaaag 40831152  T
Q  304 tagattaagcaagcttatacataagcg 330  Q
    ||  ||| |||||||||| ||||||||    
T  40831153 taccttatgcaagcttattcataagcg 40831179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 403518 - 403453
Alignment:
Q  265 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    |||| |||||||| | |||||||||||||||||||||| ||  ||| ||||||||||| |||||||    
T  403518 aaaaacaatttaacgttattttatcttttgctataaaagtaacttacgcaagcttatagataagcg 403453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 9760480 - 9760391
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaata 305  Q
    ||||||||||||| |||||| ||||||||||||||||||||   |||  ||||  |||||||   ||||||||||||| | |||||||||    
T  9760480 tttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttattttatctttttcaataaaaata 9760391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 45935294 - 45935362
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    ||||||||| ||| |||| | || || ||||||||||||||| |||| ||| |||||||||||||||||    
T  45935294 tatacaaaaacaaattaacgttaattaatcttttgctataaacatagcttatgcaagcttatacataag 45935362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 46592239 - 46592330
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaa-acaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||||| ||||||  ||||||||| ||||||||||   |||| ||||||||||||  |  |||| || |||||||||||||||||    
T  46592239 tttcataagttctccaatataacttataaaaaacaacttataacatatataaaatcaatttaccgtcatttaattttttgctataaaaatag 46592330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 53294144 - 53294205
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    |||||||||||||  ||||| | ||||||||||||||||||   ||||||||| ||||||||    
T  53294144 tttcataagttctctaatatagtttataaaaacaacttatagcatatacaaaaacaatttaa 53294205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 420400 - 420289
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| |||||   ||||||||||||   ||||||||| ||||| ||   ||||||||||||||||||||| |||| ||| ||||    
T  420400 tttcataagttctccaatatagcttacggaaacaacttatagcatatacaaaaacaattgaacattattttatcttttgctataaacatagcttatgcaa 420301  T
Q  316 gcttatacataa 327  Q
    ||||||||||||    
T  420300 gcttatacataa 420289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 38138509 - 38138620
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||||||||| ||||||| ||| ||||||||||||||||   |||||||||||||| ||| | || |||||||| | |||||||||||| |||  |||    
T  38138509 tttcataagttcgtcaatatagctaataaaaacaacttatagcatatacaaaatcaatgtaacgttactttatcttatactataaaaatagcttatccaa 38138608  T
Q  316 gcttatacataa 327  Q
     |||||||||||    
T  38138609 ccttatacataa 38138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 48470083 - 48469970
Alignment:
Q  217 ttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaag 316  Q
    |||||||||| ||||| || |||||| ||||||||||||||| ||||||||| ||||||||    ||||||||||||||| || |||||| ||| | | |    
T  48470083 ttcataagttattcaaaatagcttatgaaaacaacttatattatatacaaaaacaatttaacttaattttatcttttgctgtagaaatagcttatgaagg 48469984  T
Q  317 cttatacataagcg 330  Q
    |||||||| |||||    
T  48469983 cttatacaaaagcg 48469970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 31744349 - 31744237
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||||||||||||||||| | ||||||||  |||||| |   ||| ||||| |||||||| ||||||||||||||  |||| ||||||| ||| ||||    
T  31744349 tttcataagttcttcaatatagtttataaaattaacttaaagcatatccaaaaacaatttaacgctattttatctttaactatgaaaataggttatgcaa 31744250  T
Q  316 gcttatacataag 328  Q
    | |||||||||||    
T  31744249 gtttatacataag 31744237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 45806514 - 45806619
Alignment:
Q  223 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 322  Q
    ||||||||| | | ||||||||||||||||||||     || |||| |||||||| | |||||| |||||||||||||| |||| ||| |||||||||||    
T  45806514 agttcttcagtgtagcttataaaaacaacttatagcaattagaaaaacaatttaacgttattttctcttttgctataaacatagcttatgcaagcttata 45806613  T
Q  323 cataag 328  Q
    ||||||    
T  45806614 cataag 45806619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 4970823 - 4970929
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||||||||||  |||||  |||||||||| ||||||||   ||||||||| ||||||     ||||||||||||||||||| |||||| ||| | ||    
T  4970823 tttcataagttctctaatatatcttataaaaagaacttatagcatatacaaaaacaattt-----tattttatcttttgctatagaaatagcttatgtaa 4970917  T
Q  316 gcttatacataa 327  Q
    ||||||||||||    
T  4970918 gcttatacataa 4970929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 26779433 - 26779372
Alignment:
Q  535 taatgtctaagatattttatgatttcggaactttgattttcttgtctatgacccataaaatg 596  Q
    ||||||||||||||||||||||||| || || ||| |||||||||||||||| || ||||||    
T  26779433 taatgtctaagatattttatgattttggtaccttgtttttcttgtctatgacacacaaaatg 26779372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 45338488 - 45338384
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||| |||||| |||||| ||||| |||||||||||| |   ||||||||| |||||||| | |||||||| ||||||||| ||||||  ||| ||||    
T  45338488 tttcatcagttctccaatatagctta-aaaaacaacttacagcatatacaaaaacaatttaaggttattttattttttgctatgaaaataacttatgcaa 45338390  T
Q  316 gcttat 321  Q
    ||||||    
T  45338389 gcttat 45338384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 48140191 - 48140142
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  48140191 tattttatcttttgttataaaaatagcttatgcaagcttatacataagcg 48140142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 45806410 - 45806462
Alignment:
Q  270 caatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 322  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||||||||    
T  45806410 caatttaacgttattttatcttttgctataaaaatagcttatgcaagcttata 45806462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 31247602 - 31247665
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatac 323  Q
    ||||||||| |||||||  | ||||| |||||||||||||||||||| ||| ||||||||||||    
T  31247602 tatacaaaaccaatttatcgttatttcatcttttgctataaaaatagcttatgcaagcttatac 31247665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 19022615 - 19022717
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| |||||| ||||||||||||||||||||   | ||  ||| |||||||| | | |||||||||||   ||| |||||| ||||||||    
T  19022615 tttcataagttctccaatatagcttataaaaacaacttatagcatttattaaaacaatttaaagttcttttatcttttatgatagaaatagcttaagcaa 19022714  T
Q  316 gct 318  Q
    |||    
T  19022715 gct 19022717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 20234477 - 20234408
Alignment:
Q  262 tacaaaatcaatttaatgctattttatcttttgctataaaaa--tagattaagcaagcttatacataagc 329  Q
    ||||||| |||||||||  |||||||||||||||||||||||  ||| ||| ||| ||||||||||||||    
T  20234477 tacaaaaacaatttaattatattttatcttttgctataaaaatttagcttatgcatgcttatacataagc 20234408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 21568728 - 21568770
Alignment:
Q  286 tatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  21568728 tatcttttgctataaaaatagcttatgcaagcttatacataag 21568770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 31247666 - 31247707
Alignment:
Q  283 ttttatcttttgctataaaaatagattaagcaagcttataca 324  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  31247666 ttttatcttttgctataaaaatagcttatgcaagcttataca 31247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 43694600 - 43694661
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    ||||||||||||||| |||| ||||||||||||| ||||||   ||||||||| ||||||||    
T  43694600 tttcataagttcttcgatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 43694661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 46280302 - 46280363
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    ||||||||||||| |||||| ||||||||||||| ||||||   ||||||||| ||||||||    
T  46280302 tttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 46280363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 23989579 - 23989626
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||    
T  23989579 tattttatcttttactataaaaatagtttatgcaaacttatacataag 23989626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 19302610 - 19302688
Alignment:
Q  237 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||||||||||   ||||||||| |||||||| | || | |||||| |||| ||||||||| ||| ||||    
T  19302610 gcttataaaaacaacttataacatatacaaaaacaatttaacgttactatatcttctgctgtaaaaatagcttatgcaa 19302688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 46078143 - 46078073
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    ||||||||| ||||||||   | ||||||||||| |||||||||||  ||| | |||||||||||||||||    
T  46078143 tatacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataagcg 46078073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 20269616 - 20269527
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaata 305  Q
    |||||||| |||| |||||  |||||  |||||||||||||   | ||||||| ||||||||   | |||||||||||||||||||||||    
T  20269616 tttcataaattctccaatacagcttagtaaaacaacttataacatttacaaaaacaatttaactttgttttatcttttgctataaaaata 20269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 45004741 - 45004700
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttata 322  Q
    |||||||||||||||||||||||||| ||| |||||| ||||    
T  45004741 tattttatcttttgctataaaaatagtttatgcaagcatata 45004700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 9210602 - 9210554
Alignment:
Q  282 attttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    ||||||| |||| |||||||| ||| ||| |||||||||||||||||||    
T  9210602 attttatttttttctataaaagtagcttatgcaagcttatacataagcg 9210554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 19214436 - 19214476
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  19214436 tttcataagttctacaatatagcttatacaaacaacttata 19214476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 18076229 - 18076124
Alignment:
Q  223 agttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttata 322  Q
    ||||||||||||| ||||||||||||||||||||     || |||| ||||||||   |||||| ||||||||||||||||||  ||| |||||||||||    
T  18076229 agttcttcaatatagcttataaaaacaacttatagcaattagaaaaacaatttaaccttattttctcttttgctataaaaataacttatgcaagcttata 18076130  T
Q  323 cataag 328  Q
    ||||||    
T  18076129 cataag 18076124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 30536637 - 30536701
Alignment:
Q  265 aaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    |||| |||||||| | ||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  30536637 aaaaacaatttaacgttatcttatcttttgctataaaaatagcttatgcaagcttatacataagc 30536701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 8201273 - 8201162
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| ||| ||  |||||||||||||||||||   || |||||| |||||||||| || |||||||||  | |||||||||   || ||||    
T  8201273 tttcataagttctccaacataacttataaaaacaacttataggatacacaaaaacaatttaatgttaatttatctttgacaataaaaataacatatgcaa 8201174  T
Q  316 gcttatacataa 327  Q
    ||||||| ||||    
T  8201173 gcttatatataa 8201162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 30536474 - 30536405
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    ||||||||| ||||||||   ||||||||| |||||||||| ||||| ||| |||| |||||||||||||    
T  30536474 tatacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataagc 30536405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 24626314 - 24626222
Alignment:
Q  237 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    |||||| |||||||||||||   ||||||||| ||||||||   | ||||||| ||| ||||| |||||| ||| | ||||||||||||||||    
T  24626314 gcttatgaaaacaacttatagaatatacaaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatacataagc 24626222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 329
Target Start/End: Complemental strand, 31623600 - 31623487
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||| |||||||| |||||| |  |||||||||| ||||||   || |||| | |||||||| |  |||||||||||| |||||||||||| | | | ||    
T  31623600 tttcttaagttctccaatatagtgtataaaaacagcttatagcatacacaagagcaatttaacgtcattttatctttttctataaaaatagctaatgtaa 31623501  T
Q  316 gcttatacataagc 329  Q
    |||||| |||||||    
T  31623500 gcttatgcataagc 31623487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 415347 - 415283
Alignment:
Q  213 ttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    ||||| |||||||||| || ||| ||||||||||||||||||||   ||||| ||| ||||||||    
T  415347 ttattccataagttctccactatagcttataaaaacaacttatagcttatacgaaaacaatttaa 415283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 8147728 - 8147652
Alignment:
Q  230 caatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    |||||| |||||| |||||| ||| ||   ||||||||| ||||| ||   ||||||||||||||||||||||||||    
T  8147728 caatatagcttatgaaaacatcttttagaatatacaaaaacaattcaactttattttatcttttgctataaaaatag 8147652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 18556972 - 18556853
Alignment:
Q  210 aacttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagatt 309  Q
    |||||||||||||| || |  ||||| |||| ||||| |||||||||  |||||||||| ||||||||   ||||||||||||||| |||||||||| ||    
T  18556972 aacttatttcataatttttcaaatatagcttgtaaaagcaacttatagcgtatacaaaa-caatttaacaatattttatcttttgcaataaaaatagctt 18556874  T
Q  310 aagcaagcttatacataagcg 330  Q
    |  |||||||||||| |||||    
T  18556873 atacaagcttatacacaagcg 18556853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 41184680 - 41184770
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||| | ||||||||  ||||||| ||| ||||| | ||||||||| ||||||||   ||||||||||||||||||||||||||    
T  41184680 tttcataagttttccaatatggtatataaaaccaaattataatatatacaaaaacaatttaacattattttatcttttgctataaaaatag 41184770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 216 - 329
Target Start/End: Complemental strand, 42174895 - 42174784
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||| ||||||  |||||||||||||||||||   ||||||||| |  |||||   || ||||||||||| |||||||||||  || ||||    
T  42174895 tttcataagttctccaatataacttataaaaacaacttatagcatatacaaaaac--tttaacattactttatcttttgatataaaaatagcctatgcaa 42174798  T
Q  316 gcttatacataagc 329  Q
    ||||||||||||||    
T  42174797 gcttatacataagc 42174784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 244 - 329
Target Start/End: Complemental strand, 42391377 - 42391293
Alignment:
Q  244 aaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    |||||||||||||   ||||||||| |||||||||| |||||| | ||| | ||||||||||| ||||||||||||||||||||||    
T  42391377 aaaacaacttatagaatatacaaaaacaatttaatgttatttt-tgtttcgttataaaaatagtttaagcaagcttatacataagc 42391293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 45661185 - 45661244
Alignment:
Q  262 tacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttat 321  Q
    ||||||| |||||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  45661185 tacaaaaacaatttaatgttattttatcttttgctataaaaatgacttaagcaagcttat 45661244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 14385808 - 14385906
Alignment:
Q  231 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    ||||| ||||| ||||||||||||||    |||||||| ||||||||   |||| ||||||||||||||||||||| ||  || |||||||||||||||    
T  14385808 aatatagcttacaaaaacaacttataacagatacaaaaacaatttaacattattctatcttttgctataaaaatagtttctgccagcttatacataagc 14385906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 3234045 - 3234106
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    ||||||||||||| |||||| ||||||||||||||||||||   ||||||||| ||||||||    
T  3234045 tttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaa 3234106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 44931962 - 44932074
Alignment:
Q  216 tttcataagttcttcaatatggcttat-aaaaacaacttatattg--tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaag 312  Q
    ||||||||||| | |||||| | |||| ||||||||||||||| |  ||||||||| ||||||||  || ||||||||||||||||||| |||| ||| |    
T  44931962 tttcataagttttgcaatatagtttattaaaaacaacttatatagcatatacaaaaacaatttaa--ct-ttttatcttttgctataaatatagtttatg 44932058  T
Q  313 caagcttatacataag 328  Q
    ||||||||||| ||||    
T  44932059 caagcttatacctaag 44932074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 17603414 - 17603544
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctatttt---atcttttgctataaaaatagattaag 312  Q
    ||||| ||||||| |||||| ||||||||||||||||||||   ||||||||| |||||||| | ||||||   ||||||| ||| |||||||| |||      
T  17603414 tttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaacgttattttttaatctttttctacaaaaatagcttatt 17603513  T
Q  313 caagcttatacataagcggctgtgctataag 343  Q
    |||||  | | |||||||  |||||||||||    
T  17603514 caagcgaacatataagcgcttgtgctataag 17603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 33835484 - 33835574
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||| ||||| |||||| |||||| |||| | |||||| | ||||||||   ||||||||| ||||||||||||| |||| |||||||    
T  33835484 tttcatacgttctccaatatagcttattaaaaaagcttatagtatatacaaacgtaatttaatgttattttatctttttctatgaaaatag 33835574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 33914038 - 33914128
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||| ||||| |||||| |||||| |||| | |||||| | ||||||||   ||||||||| ||||||||||||| |||| |||||||    
T  33914038 tttcatacgttctccaatatagcttattaaaaaagcttatagtatatacaaacgtaatttaatgttattttatctttttctatgaaaatag 33914128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 45145222 - 45145176
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  45145222 tatacaaaaacaatttaatattattttatcttttgctataaaaatag 45145176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 32491511 - 32491466
Alignment:
Q  298 taaaaatagattaagcaagcttatacataagcggctgtgctataag 343  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||    
T  32491511 taaaaatagcttatgcaagcttatacataagcggttgtgctataag 32491466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 1510340 - 1510451
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||| |||||||| |||||  ||||||||||||||||||||   ||||||||| ||||| ||   || ||||||||||| | ||||||||| ||  ||||    
T  1510340 tttcgtaagttctccaatagagcttataaaaacaacttataacctatacaaaaacaattgaacatta-tttatcttttgttttaaaaatagcttttgcaa 1510438  T
Q  316 gcttatacataag 328  Q
    ||||||| |||||    
T  1510439 gcttatatataag 1510451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 27976639 - 27976523
Alignment:
Q  213 ttatttcat-aagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaa 311  Q
    ||||||||| |||||||  || || |||||| |||||||||||||   ||||||||| ||||||||   | ||  ||| |||||||||||||||| |||     
T  27976639 ttatttcattaagttctcgaagatagcttatgaaaacaacttatagcatatacaaaaacaatttaactttgttcaatcatttgctataaaaatagcttat 27976540  T
Q  312 gcaagcttatacataag 328  Q
    | |||||||||||||||    
T  27976539 gtaagcttatacataag 27976523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 37517239 - 37517335
Alignment:
Q  231 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 327  Q
    ||||| |||||| |||| |||||||| | ||||||||| ||||||||   |||||||| ||||| |||| |||||  ||| || |||||||||||||    
T  37517239 aatatagcttattaaaataacttataatatatacaaaaacaatttaactttattttatattttggtatagaaataacttatgcgagcttatacataa 37517335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 6557009 - 6556950
Alignment:
Q  218 tcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaa 277  Q
    |||||||||||| |||||  |||||||||||||||||||   ||||||||| ||||||||    
T  6557009 tcataagttctttaatataacttataaaaacaacttataacatatacaaaaacaatttaa 6556950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 47432135 - 47432033
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||||| |||||||||||  ||||||||| || ||||||   ||| ||||| ||||||||   ||||||||||||| |||||||||||| ||| | ||    
T  47432135 tttcataaattcttcaatataacttataaaa-caccttatagcatattcaaaaacaatttaactttattttatctttttctataaaaatagcttatgtaa 47432037  T
Q  316 gctt 319  Q
    ||||    
T  47432036 gctt 47432033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 33546483 - 33546589
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||| |||||||| | |||||||||||||||||| |   |||||||||  ||||||  |  ||| |||| ||||| |||||||||| |||| |||    
T  33546483 tttcataagctcttcaatctagcttataaaaacaacttagagcatatacaaaaagaatttagcgtcattatatcctttgccataaaaatagcttaatcaa 33546582  T
Q  316 gcttata 322  Q
    | |||||    
T  33546583 gattata 33546589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 34795455 - 34795545
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||||| |||||| ||| ||||||||| | ||||  ||||||| |  ||||| ||  |||||||||||||| | ||||||||||    
T  34795455 tttcataagttctccaatatagctaataaaaacagcatataacgtatacatagacaattaaactctattttatctttttcaataaaaatag 34795545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 836390 - 836459
Alignment:
Q  237 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    ||||||||||| ||||||||   ||||||||| ||||||| |  ||||||||||||  ||||||||||||    
T  836390 gcttataaaaataacttatagcttatacaaaaacaatttagttttattttatctttcactataaaaatag 836459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 5063472 - 5063403
Alignment:
Q  247 acaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaag 316  Q
    ||||||||||   ||||||||| ||| |||||| |||||||||||||  ||||||||||| ||| |||||    
T  5063472 acaacttataacatatacaaaaacaagttaatgttattttatcttttagtataaaaatagtttatgcaag 5063403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 11893238 - 11893122
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatg--ctattttatcttttgctataaaaatagattaagc 313  Q
    |||||| |||||||||| || |||||| |||||||||||  |  ||||||||| ||||||||||  ||  ||||||||||| ||| ||||||  | | ||    
T  11893238 tttcattagttcttcaacatagcttatgaaaacaacttaagtaatatacaaaaacaatttaatgttcttgtttatcttttgatatgaaaataactcatgc 11893139  T
Q  314 aagcttatacataagcg 330  Q
    ||| ||||||| |||||    
T  11893138 aagtttatacaaaagcg 11893122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 37473372 - 37473327
Alignment:
Q  283 ttttatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    ||||||| |||||||||||||||| ||| | |||||||||||||||    
T  37473372 ttttatcatttgctataaaaatagcttatgtaagcttatacataag 37473327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 38882962 - 38883030
Alignment:
Q  237 gcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    |||||| ||||||||||||||| ||||||||  |||||||  | || |||||||||||||||| ||||||    
T  38882962 gcttatgaaaacaacttatattttatacaaagacaatttagcgtta-tttatcttttgctatagaaatag 38883030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 26779955 - 26779995
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||||||||||| || |||||| |||||||||||||    
T  26779955 tttcataagttcttcaagatagcttatgaaaacaacttata 26779995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 36872772 - 36872732
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||||||| |||||| |||| |||||||||||||||    
T  36872772 tttcataagttctgcaatatagcttgtaaaaacaacttata 36872732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 49938787 - 49938747
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    |||||||||||||  ||||| ||||||||||||||||||||    
T  49938787 tttcataagttctctaatatagcttataaaaacaacttata 49938747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 16825567 - 16825694
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||||||||||  |||||| |||| || ||||||||||||  ||| |||||| ||||||||   ||||||||| ||| |||||| ||||| ||| ||||    
T  16825567 tttcataagttcggcaatatagcttgtagaaacaacttataacgtaaacaaaaacaatttaacattattttatcctttactataagaatagcttatgcaa 16825666  T
Q  316 gcttatacataagcggctgtgctataag 343  Q
    | |||||||||||||  ||| |||||||    
T  16825667 ggttatacataagcgcttgttctataag 16825694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 12976257 - 12976139
Alignment:
Q  212 cttatttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaa 311  Q
    |||||||||||||||||  ||||| |||||||||||||| || ||   |||| ||||| |||||||   |||||||| |||||||||| |||||| |||     
T  12976257 cttatttcataagttctctaatatagcttataaaaacaaattgtagcatataaaaaattaatttaactttattttatattttgctatagaaatagcttat 12976158  T
Q  312 gcaagcttatacataagcg 330  Q
    |  ||||||||||||||||    
T  12976157 gtgagcttatacataagcg 12976139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 38750382 - 38750284
Alignment:
Q  232 atatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    |||| |||||||||||||||||||||  ||||||||| || |||||   |||||| ||| |  |||||||||||| ||| |||||||||||||||||||    
T  38750382 atatagcttataaaaacaacttatatcatatacaaaaacattttaacattattttttctctgcctataaaaatagcttatgcaagcttatacataagcg 38750284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 6525857 - 6525753
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    |||||||||||||  ||||| ||||||||||||||| |||  | | || ||||| ||||||||| |||||||  ||||||||||||||||| ||| ||||    
T  6525857 tttcataagttctcaaatatagcttataaaaacaacgtatggtatttaaaaaat-aatttaatgttattttagtttttgctataaaaatagcttatgcaa 6525759  T
Q  316 gcttat 321  Q
    ||||||    
T  6525758 gcttat 6525753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 35644055 - 35644125
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    ||||| ||| |||||||| | || |||||||||||| | |||||||| |||||||||||||||||||||||    
T  35644055 tatacgaaaacaatttaacggtaatttatcttttgccagaaaaatagcttaagcaagcttatacataagcg 35644125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 14956373 - 14956437
Alignment:
Q  264 caaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    ||||| |||||||||| ||||| ||||||| | |||||||||| ||| |||||||||||||||||    
T  14956373 caaaaacaatttaatgttatttcatcttttacaataaaaatagcttatgcaagcttatacataag 14956437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 32976035 - 32975987
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  32976035 tattttatcttttgctataaaaatagcttatgcaagcttatatataagc 32975987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 42043396 - 42043487
Alignment:
Q  237 gcttataaaaacaacttatattgtatacaaaatcaatttaa-tgctattttatcttttgctataaaaatagattaagcaagcttatacataag 328  Q
    |||||| ||||||||||||||  ||| ||||| |||||||| ||| |||||||||||||||||| ||||||  || | |||||||||||||||    
T  42043396 gcttatgaaaacaacttatatcatatccaaaaacaatttaactgc-attttatcttttgctatagaaatagcatatgtaagcttatacataag 42043487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 12497305 - 12497372
Alignment:
Q  260 tatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 327  Q
    ||||||||| ||| ||||   |||||||||||||||||||||||| | ||| ||||||||||||||||    
T  12497305 tatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 16736124 - 16736034
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatag 306  Q
    |||||||| || | |||||| | ||||||| ||||||||||   | ||||||| | |||||||| |||||||||||||||||| |||||||    
T  16736124 tttcataaattttccaatatagtttataaagacaacttataacatgtacaaaaactatttaatgttattttatcttttgctatcaaaatag 16736034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 37945636 - 37945560
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatctttt 293  Q
    ||||| ||||| | |||||| |||||||||||||||| |||   |||||||||| ||||||| |||||||||||||||    
T  37945636 tttcagaagttgtacaatatagcttataaaaacaact-atagcatatacaaaattaatttaaagctattttatctttt 37945560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 38353324 - 38353276
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  38353324 tattttatcttttgc-ataaaaatagcttatgcaagcttatacataagcg 38353276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 10758301 - 10758397
Alignment:
Q  231 aatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttatacataa 327  Q
    ||||| ||||||||| ||||||||||   ||||||||| ||||||||   ||||||||  ||||||||| |||||| ||| |  |||||||||||||    
T  10758301 aatatagcttataaagacaacttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatagtttacgtgagcttatacataa 10758397  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 28763414 - 28763371
Alignment:
Q  210 aacttatttcataagttcttcaatatggcttataaaaacaactt 253  Q
    ||||||||||||||||||  |||||| |||||||||||||||||    
T  28763414 aacttatttcataagttcagcaatatagcttataaaaacaactt 28763371  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 25930590 - 25930712
Alignment:
Q  222 aagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaagcttat 321  Q
    ||||||| ||| || |||||| ||||||| ||| |   ||||||||| || ||||||  ||||| ||| ||| ||||| |||||| ||| | ||||||||    
T  25930590 aagttctccaagatagcttatgaaaacaatttaaagcatatacaaaaacattttaattttatttcatcctttcctatagaaatagcttatgtaagcttat 25930689  T
Q  322 acataagcg-gctgtgctataag 343  Q
    ||||||| | |||||||||||||    
T  25930690 acataagagcgctgtgctataag 25930712  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 1058169 - 1058218
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 330  Q
    ||||||||  |||||||||||||||| ||| | |||||||||||||||||    
T  1058169 tattttatgatttgctataaaaatagcttatgtaagcttatacataagcg 1058218  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 15180581 - 15180469
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttatattgtatacaaaatcaatttaatgctattttatcttttgctataaaaatagattaagcaa 315  Q
    ||||| ||||||| |||||| ||||||| ||||||||||||   | |||||||  ||||||| | ||  |||||||||||| || |||||  ||| ||||    
T  15180581 tttcagaagttctccaatatagcttatagaaacaacttataacatttacaaaaataatttaacgatacgttatcttttgctgtacaaataacttatgcaa 15180482  T
Q  316 gcttatacataag 328  Q
     |||||| |||||    
T  15180481 acttatagataag 15180469  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 29168147 - 29168195
Alignment:
Q  281 tattttatcttttgctataaaaatagattaagcaagcttatacataagc 329  Q
    ||||||||||||||||||| |||||| ||| |  |||||||||||||||    
T  29168147 tattttatcttttgctatagaaatagcttatgtgagcttatacataagc 29168195  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 29818944 - 29818984
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||| ||  |||||||||||||||||||||||||||    
T  29818944 tttcataagctcgccaatatggcttataaaaacaacttata 29818984  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 30657802 - 30657842
Alignment:
Q  216 tttcataagttcttcaatatggcttataaaaacaacttata 256  Q
    ||||||||||||| |||||| ||||||||||||| ||||||    
T  30657802 tttcataagttctccaatatagcttataaaaacatcttata 30657842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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