View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1285-Insertion-5 (Length: 774)
Name: NF1285-Insertion-5
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-5 |
 | |
|
| [»] chr3 (14 HSPs) |
| |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 708; Significance: 0; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 8 - 774
Target Start/End: Original strand, 2819373 - 2820140
Alignment:
| Q |
8 |
ggtttatacccagaggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2819373 |
ggtttatacccagaggactatgctattagtcatgggagaataactcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccag |
2819472 |
T |
|
| Q |
108 |
agcaagttgcagaggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2819473 |
agcaagttgcagaggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtcca |
2819572 |
T |
|
| Q |
208 |
tgatttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactaga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
2819573 |
tgatttattgcgggaagtgatcattacaaaaataaaggatttaagattttgtcattgtgtgcatgatgatggtgagttacccgtgaatggaaaaactaga |
2819672 |
T |
|
| Q |
308 |
cgcctatctataaccactagtaacaacgatgtattgaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagc |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2819673 |
cgcctatctataaccactagtgacaacgatgtgttgaagagcactaacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagc |
2819772 |
T |
|
| Q |
408 |
atttcatgggcaaactgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtctttt |
507 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2819773 |
atttcgtgggcaaactgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattgaatcatgtacctaaaaatttggggagtctttt |
2819872 |
T |
|
| Q |
508 |
ccacttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacaca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2819873 |
ccacttaaggtacttaaacctaaagaatacaaaaatacatgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacaca |
2819972 |
T |
|
| Q |
608 |
cttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggct |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2819973 |
cttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggct |
2820072 |
T |
|
| Q |
708 |
ttacatctggtgtgaagatggaaaaaggtatt-aaaacatggcttcattgcagaaactttattatgtg |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2820073 |
ttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttcattgcagaaactttattatgtg |
2820140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 774
Target Start/End: Original strand, 2760030 - 2760794
Alignment:
| Q |
8 |
ggtttatacccagaggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccag |
107 |
Q |
| |
|
|||||||| |||||||| | ||||||| |||| ||||||||| || ||||||| |||||||||||||||| || || | ||||||||||||||||| |
|
|
| T |
2760030 |
ggtttatatccagaggattttgctattcatcataggagattaactcaacaatgggcagctgaagggtttgttaaa---tctgatgggagaagaactccag |
2760126 |
T |
|
| Q |
108 |
agcaagttgcagaggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtcca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||| ||||| ||| |||||||||||| |
|
|
| T |
2760127 |
agcaagttgcagaggagtacttgtctgaattgattcagagaagtctagtccaagtctcggatgttaactttgaagggaaagtacatacatgtcaagtcca |
2760226 |
T |
|
| Q |
208 |
tgatttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| ||||| || |||||| ||||||| |||||||| | ||| | | ||| ||||||||| |
|
|
| T |
2760227 |
tgatttattgcgggaagtgatcattagaaaaatgaaggatttgagtttctgccattgtatgcatgatgatggtgaatcacttgtggttgggaaaactaga |
2760326 |
T |
|
| Q |
308 |
cgcctatctataaccactagtaacaacgatgtattgaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagc |
407 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| ||||||||| || ||||||||||||| |||||||||||||||||| ||||| || ||| ||||||| |
|
|
| T |
2760327 |
cgcctatcaataaccactagccacaacaatgtgttgaagagctctaacatttcacatttccgtgctattcatgtttttcataaaagtgtgtcattggagc |
2760426 |
T |
|
| Q |
408 |
atttcatgggcaaactgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtctttt |
507 |
Q |
| |
|
||||| ||||||||||| |||| || ||| ||||||||||||||||||||||| |||||||||| || |||||| | |||||||||||||||| |||||| |
|
|
| T |
2760427 |
atttcgtgggcaaactgtgttcgaaatctaggattttgaaggtacttgacattgaaggtacatcgttgaatcatattcctaaaaatttggggaatctttt |
2760526 |
T |
|
| Q |
508 |
ccacttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacaca |
607 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||| |||||||||||||||| | | ||||||| ||||||| |
|
|
| T |
2760527 |
tcacttaaggtacttaaacctaaagagtacaaaaataaaggttcttcctaaatcagttggtgagctacagaacttagagatattggatataacatacaca |
2760626 |
T |
|
| Q |
608 |
cttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggct |
707 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||| ||||| || | |
|
|
| T |
2760627 |
cttgtgcatgagataccaagagagataaacaagctcacaaagcttcgtcaccttttcgcattacaccgtaactatgaagaaaagtattcactgtttggat |
2760726 |
T |
|
| Q |
708 |
ttacatctggtgtgaagatggaaaaaggtatt-aaaacatggcttcattgcagaaactttattatgtg |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| | || || |||||||||||| |
|
|
| T |
2760727 |
ttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatgtg |
2760794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 12 - 743
Target Start/End: Original strand, 2808087 - 2808815
Alignment:
| Q |
12 |
tatacccagaggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccagagca |
111 |
Q |
| |
|
|||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| || |||| || |||||||||||||||||| |
|
|
| T |
2808087 |
tatatccagaggactactctattaatcataagagattaactcgacaatggatagctgaagggtttgttaaa---tcagatgagagaagaactccagagca |
2808183 |
T |
|
| Q |
112 |
agttgcagaggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtccatgat |
211 |
Q |
| |
|
| |||||||| ||||||| |||| ||||||| |||||||||||||| ||||| |||||| ||||||||| |||||| | | |||||||||||||||| |
|
|
| T |
2808184 |
tatagcagaggaatacttgtatgaattgattcacagaagtctggttcaggtctcaaatgttggctttgaaggaaaagttcaaatatgtcaagtccatgat |
2808283 |
T |
|
| Q |
212 |
ttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactagacgcc |
311 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||| || | | | ||| ||||||||||||||| | |
|
|
| T |
2808284 |
ttattgcggcaagtgatcattaggaaaatgaaggatttaagtttttgtcattctgtgcgtgaagataacgaatcaatcgcggttggaaaaactagacgtc |
2808383 |
T |
|
| Q |
312 |
tatctataaccactagtaacaacgatgtattgaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcattt |
411 |
Q |
| |
|
|||||||| ||||| | | || |||| ||||||| || ||| ||||||||| ||||||||||||||||| || |||| || ||||||||||| | |
|
|
| T |
2808384 |
tatctatagtcactactcccgacaatgttcagaagagcgctaacaattcacatttccgtgctattcatgttttcgaaaaaggtgaaccgttggagcatat |
2808483 |
T |
|
| Q |
412 |
catgggcaaactgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccac |
511 |
Q |
| |
|
||||| || || ||||||||||| | |||||||||||| ||||||||||||||||||| || ||||| | |||||||||||||||| |||||| ||| |
|
|
| T |
2808484 |
catggataagctttgttcaaagtctagtattttgaaggtatttgacattcaaggtacatccttgcatcatattcctaaaaatttggggaatctttttcac |
2808583 |
T |
|
| Q |
512 |
ttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacacacttg |
611 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||| |||| ||||||||| |
|
|
| T |
2808584 |
ttaaggtacttaaacctaaggaatacaaaaatacaggctcttcctaaatctgttggtgaactgcagaacttagagacattggatttaagggacacacttg |
2808683 |
T |
|
| Q |
612 |
tgcgtgagataccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttac |
711 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||| | ||||||||||| || || |||||||| |||||||| |||||||| || |||||||| |
|
|
| T |
2808684 |
tgcgtgagataccaagtgaaataaacaagctcaaaaagctaaggcaccttcttgctttccaccgtaactacgaagaaaagtattctcttttaggctttac |
2808783 |
T |
|
| Q |
712 |
atctggtgtgaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
| | |||||| |||||||||||||||||| |
|
|
| T |
2808784 |
aacgggtgtgttcgtggaaaaaggtattaaaa |
2808815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 743
Target Start/End: Original strand, 2798190 - 2798909
Alignment:
| Q |
21 |
aggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccagagcaagttgcaga |
120 |
Q |
| |
|
|||||||| |||| | |||| |||||||| |||||||||||||||||||||||||||| || || | || |||| |||||| |||| ||||||||| |
|
|
| T |
2798190 |
aggactattctatcaatcataagagattaactcgacaatggatagctgaagggtttgttaaa---tctgatgagagacgaactcaagagatagttgcaga |
2798286 |
T |
|
| Q |
121 |
ggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtccatgatttattgcgg |
220 |
Q |
| |
|
||||| ||||||||||| ||||| |||||| ||||||| ||||| |||||| |||||||| |||||| | | ||| | ||||||||||||||| ||| |
|
|
| T |
2798287 |
agagtatttgtctgaactaattcacagaagtatggttcaggtctcaaatgttggatttgaagggaaagttcaaacatgccgagtccatgatttattccgg |
2798386 |
T |
|
| Q |
221 |
gaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactagacgcctatctataa |
320 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| || ||||||||||||||| ||||| |||| | | | || ||| |||||||||||||||||||| |
|
|
| T |
2798387 |
gaagtgctcattagaaaaatgaaggatttaagattctgtcattgtgtgcatcaagatagtgaatcaatcgcagttgggaaaactagacgcctatctattg |
2798486 |
T |
|
| Q |
321 |
ccactagtaacaacgatgtattgaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcatttcatgggcaa |
420 |
Q |
| |
|
||| | || ||| |||| |||||||||||| ||| | | ||||||||||| |||||||||||||| |||| || || ||||||||||| ||||| || |
|
|
| T |
2798487 |
ccagttgtccaaacaatgtgttgaagagcactaacaatacgcattttcgtgcaattcatgtttttgaaaaagatgaatcattggagcatttgatgggtaa |
2798586 |
T |
|
| Q |
421 |
actgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccacttaaggtac |
520 |
Q |
| |
|
|||| ||||| ||||| |||| |||||||| ||||||||||||||||||||||| || || | ||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
2798587 |
actgtgttcacagtctaggatattgaaggtgcttgacattcaaggtacatcattgaaaaatattcctaaaaatttggtgagtctttgtcacataaggtac |
2798686 |
T |
|
| Q |
521 |
ttaaacctaaagaatacaaaaatacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacacacttgtgcgtgaga |
620 |
Q |
| |
|
||||||||| |||| || ||| ||||||| ||||||||||||||||||||||||||||||||| | ||| | ||| |||||||||||| ||| | |
|
|
| T |
2798687 |
ataaacctaagttatactaatgtacagactcttccgaaatctgttggtgaactacagaacttagagacattggatttgagaaacacacttgtgcatgaaa |
2798786 |
T |
|
| Q |
621 |
taccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttacatctggtgt |
720 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| ||||||||||| || |||||||||||||||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
2798787 |
taccaagtgaaataaacaagctcacaaagctacggcaccttcttgctttccatcgtaactatgaagcggagtattctcttttgggctttacaactggtgt |
2798886 |
T |
|
| Q |
721 |
gaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
2798887 |
gttgatggaaaaaggtattaaaa |
2798909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 743
Target Start/End: Original strand, 2749811 - 2750543
Alignment:
| Q |
8 |
ggtttatacccagaggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccag |
107 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||||||| || || | | |||||||||||||| |
|
|
| T |
2749811 |
ggtttatacccagaggactatgcaattaatcataggagattaactcgacaatggatagctgaagggtttgt---aaaattggaagagagaagaactccag |
2749907 |
T |
|
| Q |
108 |
agcaagttgcagaggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtcca |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||||||| |||||| | | |||||||||||| |
|
|
| T |
2749908 |
agcaagttgcagaagagtacttgtctgaattgattcagagaagtttggttcaggtctcaaatgttggctttgaaggaaaagttcaaacatgtcaagtcca |
2750007 |
T |
|
| Q |
208 |
tgatttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactaga |
307 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||| |||||||||| ||| ||||||| ||||||||||| |||| | | | || ||||| ||||||| |
|
|
| T |
2750008 |
tgatttaatgcgggaattgatcattagaaaaatgaaggatttaaatttcggtcattgcatgcatgaagatagtgaatcagttgcacttggaagaactaga |
2750107 |
T |
|
| Q |
308 |
cgcctatctataaccactagtaacaacgatgtattgaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagc |
407 |
Q |
| |
|
|||||||||||| |||||| | |||| |||| || | ||||||| | | || ||| ||||| |||||| |||| ||||| ||| ||| || ||||||| |
|
|
| T |
2750108 |
cgcctatctatagccactaatcccaacaatgtgttcaggagcactaataatttacaatttcgggctatttatgtgtttgaagaagatggatcattggagc |
2750207 |
T |
|
| Q |
408 |
atttcatgggcaaactgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtctttt |
507 |
Q |
| |
|
|||||||||| ||| | |||| |||| | ||||||||||| |||||||||||||| || || || |||||| | |||||||||||||||| |||||| |
|
|
| T |
2750208 |
atttcatgggtaaagtttgttcgcagtcaagaattttgaaggtccttgacattcaagggacgtcgttgaatcatatccctaaaaatttggggaatctttt |
2750307 |
T |
|
| Q |
508 |
ccacttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacaca |
607 |
Q |
| |
|
||||| ||||| | ||||||| ||||||||| || ||||||||||||||| ||||||| |||| |||||||||||| | ||| ||||| | ||| |
|
|
| T |
2750308 |
tcacttgcggtacattaacctaaggaatacaaatgtaaaggctcttcctaaatctattggtgagttacataacttagagacattggatttaagagaaaca |
2750407 |
T |
|
| Q |
608 |
cttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggct |
707 |
Q |
| |
|
|| |||| ||||||||| ||| | ||||||||||| |||||| |||| || || ||||| || ||||| ||||||||| |||| |||||| ||||||| |
|
|
| T |
2750408 |
ctagtgcatgagatacctagtgaaataaacaagctgacaaagttacggcatctgcttgcttttcatcgcaactatgaacaaaaatattctgctttgggct |
2750507 |
T |
|
| Q |
708 |
ttacatctggtgtgaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
|||| |||| ||| ||| |||||||||||||||| |
|
|
| T |
2750508 |
ctacaactggcgtgctgattgaaaaaggtattaaaa |
2750543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 743
Target Start/End: Original strand, 5413702 - 5414433
Alignment:
| Q |
8 |
ggtttatacccagaggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccag |
107 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||| | |
|
|
| T |
5413702 |
ggtttatatccagaggactatgttattaatcataggagattaactcgacaatggatagctgaagggtttgttcaattgcaaga---gagaagaactccgg |
5413798 |
T |
|
| Q |
108 |
agcaagttgcagaggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtcca |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||| |||||| ||||||||| |||||| | | ||||||||| || |
|
|
| T |
5413799 |
agcaagttgcagaggaatacttgtctgaattgattcaaagaagtctggttcaggtctcaaatgttggctttgaaggaaaagttcaaacatgtcaagtaca |
5413898 |
T |
|
| Q |
208 |
tgatttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactaga |
307 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |||||||||||||| ||||| ||||||| ||||| |||| | | | | | ||||||||||||| |
|
|
| T |
5413899 |
tgatttactgcgggaagtgatcattagaaaaatgaaggatttaagtttcggtcatagtgtgcaacaagatagtgaatcagtcgtggttggaaaaactaga |
5413998 |
T |
|
| Q |
308 |
cgcctatctataaccactagtaacaacgatgtattgaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagc |
407 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||| | | ||||||| | | |||||||||||||||||||||| ||||| |||| ||| || ||||| |
|
|
| T |
5413999 |
cgcctatctatagccactagtccaaacaatgtactaaggagcactattaatccacattttcgtgctattcatgtgtttgaaaaaggtggatctccggagc |
5414098 |
T |
|
| Q |
408 |
atttcatgggcaaactgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtctttt |
507 |
Q |
| |
|
||||||| || | ||| ||||| |||||||||| ||||||| ||||||||||||||||||| || |||||| | |||||||| ||||||| |||||| |
|
|
| T |
5414099 |
atttcataggtatactttgttcacggtctcggattctgaaggttcttgacattcaaggtacattgttgaatcatatccctaaaaacttggggaatctttt |
5414198 |
T |
|
| Q |
508 |
ccacttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacaca |
607 |
Q |
| |
|
||||| |||||| | ||||||| |||||| ||| || | |||||||||||||| | |||| || | |||||||||||| | ||| ||||| | ||| |
|
|
| T |
5414199 |
tcacttgaggtacattaacctaaggaatacgaaagtaaaggttcttcctaaatctg-tagtgagctgtataacttagagacattggatttaagagaaaca |
5414297 |
T |
|
| Q |
608 |
cttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggct |
707 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||| | ||| |||| || |||||||| || |||||||||| ||||||||| |||||| | |||| |
|
|
| T |
5414298 |
cttgtgcatgagataccaagtgaaataaacaagctgaaaaatttacggcatcttcttgctttccatcgtaactttgaagaaaaatattctgctctaggct |
5414397 |
T |
|
| Q |
708 |
ttacatctggtgtgaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| |
|
|
| T |
5414398 |
cgacaactggtgtgctgatggaaaaaggtattaaaa |
5414433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 43 - 743
Target Start/End: Original strand, 2791171 - 2791862
Alignment:
| Q |
43 |
gagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccagagcaagttgcagaggagtacttgtctgaactgatt |
142 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| || |||| | | || |||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
2791171 |
gagattaactcgacaatggatagccgaagggtttatt-aaatgtta--tgagagacgaactccagaggaagttgcagaggagtacttgtctgaattgatt |
2791267 |
T |
|
| Q |
143 |
cagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtccatgatttattgcgggaagtgatcattacaaaaataa |
242 |
Q |
| |
|
|| |||||| | ||||||||||| |||||| ||| |||||| | | ||||||||||||||||||||| ||||||| |||| | |||||| | |
|
|
| T |
2791268 |
catagaagtttagttcaagtctcaattgttga------agggaaagttcaaacatgtcaagtccatgatttattctgggaagttctcatcagaaaaatga |
2791361 |
T |
|
| Q |
243 |
aggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactagacgcctatctataaccactagtaacaacgatgtatt |
342 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||| | | | | | ||||| |||||||||||||||||| |||||| | |||| |||| || |
|
|
| T |
2791362 |
aggacttaagtttctgtcattgtgtgcatgatgatggtgaatcaatcgtggttggaagcactagacgcctatctatatccactaatctcaacaatgtgtt |
2791461 |
T |
|
| Q |
343 |
gaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcatttcatgggcaaactgggttcaaagtctcggatt |
442 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| || |||| ||| || |||||| |||| ||||| |||||| |||| ||||| | ||| |
|
|
| T |
2791462 |
gaagagcactaacaattcacattttcgtgctattcatgttttggaaaaaggtggatcattggagaatttgatgggtaaactgtgttcgcagtctagcatt |
2791561 |
T |
|
| Q |
443 |
ttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccacttaaggtacttaaacctaaagaatacaaaaa |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | ||||||||| |||| |||||||| ||||| |||||| ||||||||| |||| || |
|
|
| T |
2791562 |
ttgaaggtacttgacattcaaggtacatcattgaatcatattcctaaaaatctgggaagtctttttcacttgaggtacataaacctaagctatactaatg |
2791661 |
T |
|
| Q |
543 |
tacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacacacttgtgcgtgagataccaagtcagataaacaagct |
642 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| ||||||||| | ||| ||||| | |||||||||| ||| ||||| | | ||||||||| | |
|
|
| T |
2791662 |
tacaaactcttcctaaatctgttggtgagctacagaatttagagacattagatttaagagaaacacttgtgcatgaactaccacatgaaataaacaagtt |
2791761 |
T |
|
| Q |
643 |
cacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttacatctggtgtgaagatggaaaaaggtattaaa |
742 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| ||| |||||||||||| ||||||| |||| ||||||||| |||| |||||||||||||| |
|
|
| T |
2791762 |
ggaaaagctacggaaccttcttgttcgccatagtaactacaaaggaaattattctcttttgggctatacaactggtgtgaggatgcaaaaaggtattaaa |
2791861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 56 - 743
Target Start/End: Complemental strand, 2837874 - 2837193
Alignment:
| Q |
56 |
caatggatagctgaagggtttgttcaaatatcagttgggagaagaactccagagcaagttgcagaggagtacttgtctgaactgattcagagaagtctgg |
155 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | | || |||||||||| |||||||| || ||||| |||||||| ||| ||||||| ||||||||| |
|
|
| T |
2837874 |
caatggatagctgaggggtttgt-caaatctga--tgagagaagaactttggagcaagtggctgaggaatacttgtcagaattgattcacagaagtctga |
2837778 |
T |
|
| Q |
156 |
ttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtccatgatttattgcgggaagtgatcattacaaaaataaaggatttaagttt |
255 |
Q |
| |
|
|||| ||||| |||||| ||||||||| |||||| | | |||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||| |
|
|
| T |
2837777 |
ttcaggtctcaaatgttggctttgaagggaaagttaaaacatgtcaagtccatgatttattgcgggaagttatcattagaaaaatgaagaatttaagttt |
2837678 |
T |
|
| Q |
256 |
ttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactagacgcctatctataaccactagtaacaacgatgtattgaagagcactgac |
355 |
Q |
| |
|
||||||| ||||||||||| |||| | | | || ||||| |||||||||| |||| || | ||| | |||| ||| ||| |||| || || |
|
|
| T |
2837677 |
ctgtcattttgtgcatgaag---gtgattcagttgcagttggaataactagacgcttatcaattgcttctaattccaacaatgcgttgcagagaacaaac |
2837581 |
T |
|
| Q |
356 |
atttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcatttcatgggcaaactgggttcaaagtctcggattttgaaggtacttg |
455 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||| ||| | | |||||| |||||| || ||| | ||||| | ||| |||| ||||||||||||| |
|
|
| T |
2837580 |
aattcacattttcgtgctattcatgtttttggaaaaggtggattgctggagcctttcattggtaaattatgttcacactctaggatattgaaggtacttg |
2837481 |
T |
|
| Q |
456 |
acattcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccacttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcc |
555 |
Q |
| |
|
||||||| ||||| || || |||||| | |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| || | |||||| |
|
|
| T |
2837480 |
acattcagggtacgtctttgaatcatattcctaaaaatttggggaatctttttcacttaaggtacttaaacctaaggaatacaaaagtaaaggttcttcc |
2837381 |
T |
|
| Q |
556 |
taaatctgttggtgaactacagaacttagagacactcgatataagatacacacttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgt |
655 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| | || ||||| | |||| ||| | |||||| ||| || | ||||||||||||||||||||||| |
|
|
| T |
2837380 |
taaatctattggtgaattacagaacttagagacattggacttaagagaaacacatgttcatgagatgccaggtgaaataaacaagctcacaaagctacga |
2837281 |
T |
|
| Q |
656 |
caccttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttacatctggtgtgaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
||||||||||| || |||||||||||||| | ||| |||||| | |||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
2837280 |
caccttcttgctttccatcgtaactatgatgcaaagtattctgttttgggctttacaactggtgtgcggatggttaaaggtattaaaa |
2837193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 56 - 743
Target Start/End: Complemental strand, 2855084 - 2854403
Alignment:
| Q |
56 |
caatggatagctgaagggtttgttcaaatatcagttgggagaagaactccagagcaagttgcagaggagtacttgtctgaactgattcagagaagtctgg |
155 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | | || |||||||||| |||||||| || ||||| |||||||| ||| ||||||| ||||||||| |
|
|
| T |
2855084 |
caatggatagctgaggggtttgt-caaatctga--tgagagaagaactttggagcaagtggctgaggaatacttgtcagaattgattcacagaagtctga |
2854988 |
T |
|
| Q |
156 |
ttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtccatgatttattgcgggaagtgatcattacaaaaataaaggatttaagttt |
255 |
Q |
| |
|
|||| ||||| |||||| ||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
2854987 |
ttcaggtctcaaatgttggctttgaagggaaagttaaaacatgtcaagtccatgatttattgcgggaagtgatcattagaaaaatgaagaatttaagttt |
2854888 |
T |
|
| Q |
256 |
ttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactagacgcctatctataaccactagtaacaacgatgtattgaagagcactgac |
355 |
Q |
| |
|
||||||| |||||||||| |||| | | || ||||| | ||||||||||||| ||| | || | |||| |||| |||| ||| | || |
|
|
| T |
2854887 |
ctgtcatttcgtgcatgaag---gtgaatctgtcgctgttggaatatctagacgcctatcaatagcttctcattccaacaatgtgttgatgagagcaaac |
2854791 |
T |
|
| Q |
356 |
atttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcatttcatgggcaaactgggttcaaagtctcggattttgaaggtacttg |
455 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||| ||| | |||||||| |||||| || ||| | ||||| ||||| |||| ||||||||||||| |
|
|
| T |
2854790 |
aattcacattttcgtgctattcatgtttttggaaaaggtggattgttggagcctttcattggtaaattatgttcacagtctaggatattgaaggtacttg |
2854691 |
T |
|
| Q |
456 |
acattcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccacttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcc |
555 |
Q |
| |
|
||||||||||||| || || ||| || | ||||| ||||| |||| |||||| |||||||||||||||||||||| |||||||||| || | |||||| |
|
|
| T |
2854690 |
acattcaaggtacgtctttgaattatattcctaataattttgggaatctttttcacttaaggtacttaaacctaaggaatacaaaagtaaaggttcttcc |
2854591 |
T |
|
| Q |
556 |
taaatctgttggtgaactacagaacttagagacactcgatataagatacacacttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgt |
655 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | || ||||| ||||| ||| | |||||| |||||| | ||||||||||| ||||||||||| |
|
|
| T |
2854590 |
taaatctattggtgaactacagaacttagagacattggacttaagagacacatctgttcatgagatgccaagtgaaataaacaagcttacaaagctacgg |
2854491 |
T |
|
| Q |
656 |
caccttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttacatctggtgtgaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
||||||||||| || ||| ||| ||||| | ||| |||||||| ||||| |||||| | |||||| | || ||||||||||||||| |
|
|
| T |
2854490 |
caccttcttgctttccataataattatgatgcaaagtattctcttttgggatttacaaccggtgtgttggtgaaaaaaggtattaaaa |
2854403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 43 - 743
Target Start/End: Original strand, 2769920 - 2770608
Alignment:
| Q |
43 |
gagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccagagcaagttgcagaggagtacttgtctgaactgatt |
142 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| || || || | || |||| |||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
2769920 |
gagattaacacggcaatggatagctgaagggtttattaaa---tctgatgagagacgaaccccagaagaagttgcagaggagtacttgtctgaattgatt |
2770016 |
T |
|
| Q |
143 |
cagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtccatgatttattgcgggaagtgatcattacaaaaataa |
242 |
Q |
| |
|
|| |||||| | ||||||||||| |||||| ||| ||| || | | ||||||||||||||||||||| | |||||| |||||| |||||| | |
|
|
| T |
2770017 |
catagaagtttagttcaagtctcaattgttga------agggaaaattcaaacatgtcaagtccatgatttattccaggaagttttcattaaaaaaatga |
2770110 |
T |
|
| Q |
243 |
aggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactagacgcctatctataaccactagtaacaacgatgtatt |
342 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| |||| | | | ||| |||||| |||||||||||||| ||| |||||||| |||| |||| || |
|
|
| T |
2770111 |
aggacttaagtttctgtcattgtgtgcatgatgatagtgaatcaatcgcggttggaaacactagacgcctatccatagccactagtctcaacaatgtgtt |
2770210 |
T |
|
| Q |
343 |
gaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcatttcatgggcaaactgggttcaaagtctcggatt |
442 |
Q |
| |
|
|||||| ||| ||| ||||||||||| ||||||||||||||| || |||| ||| || ||||| |||| |||| |||||| ||||| || || | ||| |
|
|
| T |
2770211 |
gaagagtactaacaattcacattttcatgctattcatgttttcgaaaaaggtggaccgatggagaatttgatggataaactgtgttcacagcctagcatt |
2770310 |
T |
|
| Q |
443 |
ttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccacttaaggtacttaaacctaaagaatacaaaaa |
542 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| | |||||||||||||| |||||||| |||||||||||| ||||||||| |||| || |
|
|
| T |
2770311 |
ttgaaggtacttgacattcaaggtacatcgttgaatcatattcctaaaaatttgggaagtctttttcacttaaggtacataaacctaagttatactaatg |
2770410 |
T |
|
| Q |
543 |
tacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacacacttgtgcgtgagataccaagtcagataaacaagct |
642 |
Q |
| |
|
||| |||||||||||||||||||||| ||| |||| ||||||||| | ||| ||||| | |||||||||| ||| ||||| | | |||||||| | |
|
|
| T |
2770411 |
tacagactcttcctaaatctgttggtgagctaaagaatttagagacattagatttaagagaaacacttgtgcatgaactaccacatgaaataaacaaatt |
2770510 |
T |
|
| Q |
643 |
cacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttacatctggtgtgaagatggaaaaaggtattaaa |
742 |
Q |
| |
|
||||||||| ||||||||| | ||| ||||||| |||| |||||||||||| |||||| ||| |||||| || |||| |||||||||||||| |
|
|
| T |
2770511 |
ggaaaagctacgaaaccttcttgtttgccatagtaactacgaaggaaattattctcttttgggc---acaactggtgggaggatgcaaaaaggtattaaa |
2770607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 3356524 - 3356427
Alignment:
| Q |
175 |
ctttgaaggtaaagttgataaatgtcaagtccatgatttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatg |
272 |
Q |
| |
|
|||||| || |||||| | | |||||||||||||||||| ||||| |||||| |||||| |||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
3356524 |
ctttgatgggaaagttaaaagatgtcaagtccatgatttgttgcgtgaagtggtcattaaaaaaatgaaagatttaagtttttgtcattcagtgcatg |
3356427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 3303081 - 3303000
Alignment:
| Q |
197 |
tgtcaagtccatgatttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatg |
278 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||| |||||| || ||| |||||| ||||||| |||||||||||| |
|
|
| T |
3303081 |
tgtcaagtccatgatgtgttgcgtgaagtgatcattaaaaaaatgaaagatcaaagtttctgtcatttaatgcatgaagatg |
3303000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 18966632 - 18966602
Alignment:
| Q |
48 |
taattcgacaatggatagctgaagggtttgt |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18966632 |
taattcgacaatggatagctgaagggtttgt |
18966602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 3321371 - 3321310
Alignment:
| Q |
194 |
aaatgtcaagtccatgatttattgcgggaagtgatcattacaaaaataaaggatttaagttt |
255 |
Q |
| |
|
|||| |||||| |||||||| ||||| ||||||||| ||| |||||| || ||||||||||| |
|
|
| T |
3321371 |
aaatttcaagttcatgatttgttgcgtgaagtgatccttagaaaaatgaaagatttaagttt |
3321310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 743
Target Start/End: Complemental strand, 5470 - 4742
Alignment:
| Q |
12 |
tatacccagaggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgttcaaatatcagttgggagaagaactccagagca |
111 |
Q |
| |
|
|||| |||||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||||| || ||| | || |||| |||||| ||||| |
|
|
| T |
5470 |
tatatccagaggactattctattaatcataagagattaactcgtcaatggatagctgaagggtttgtt-aagtatga--tgagagacaaactcccgagca |
5374 |
T |
|
| Q |
112 |
agttgcagaggagtacttgtctgaactgattcagagaagtctggttcaagtctcggatgttgactttgaaggtaaagttgataaatgtcaagtccatgat |
211 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||| |||||| |||||| || |||||| | | |||||||||||||||| |
|
|
| T |
5373 |
agttgcagatgagtacttgtctgaattgattcacagaagtctggttcaggtctcaaatgttggctttgaggggaaagttcaaacatgtcaagtccatgat |
5274 |
T |
|
| Q |
212 |
ttattgcgggaagtgatcattacaaaaataaaggatttaagtttttgtcattgtgtgcatgaagatggtgagttactagcgaatggaaaaactagacgcc |
311 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||||| || |||| | | | | | || |||||||||||||| |
|
|
| T |
5273 |
ttattgcgtgaagtgatcattagaaaaatgaaggatttaactttttgtcattgtgtgcatgaaaatagtgaatcaattgtggttgtaaaaactagacgcc |
5174 |
T |
|
| Q |
312 |
tatctataaccactagtaacaacgatgtattgaagagcactgacatttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcattt |
411 |
Q |
| |
|
| ||||||||||||||| || | |||| ||||||||||| || | ||||||||||||||||||||| |||||||| |||| ||| |||||||||||||| |
|
|
| T |
5173 |
tgtctataaccactagtcccagcaatgtgttgaagagcaccgataattcacattttcgtgctattcacgtttttgaaaaaggtggatcgttggagcattt |
5074 |
T |
|
| Q |
412 |
catgggcaaactgggttcaaagtctcggattttgaaggtacttgacattcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccac |
511 |
Q |
| |
|
|||||| |||||| | ||| ||||| |||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||| |||||| ||| |
|
|
| T |
5073 |
catgggtaaactgtgctcacagtctaagattttgaaggtacttgacattcaaggtacatcattgaatcatattcccaaaaatttggggaatctttttcac |
4974 |
T |
|
| Q |
512 |
ttaaggtacttaaacctaaagaatacaaaaatacgtgctcttcctaaatctgttggtgaactacagaacttagagacactcgatataagatacacacttg |
611 |
Q |
| |
|
|| |||||| |||||||| ||| |||||| || ||||||||||||||||||||||| ||||| ||||||||||| | ||| ||||| | ||||||| |
|
|
| T |
4973 |
ttgaggtacataaacctacggaacacaaaagtagaggctcttcctaaatctgttggtgagctacaaaacttagagacgttggatttaagagaaacacttg |
4874 |
T |
|
| Q |
612 |
tgcgtgagataccaagtcagataaacaagctcacaaagctacgtcaccttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttac |
711 |
Q |
| |
|
||| |||| | |||| | | ||||||||||| |||| | |||| || || ||||| || ||||||||||||||||| || |||||| | || |||||||| |
|
|
| T |
4873 |
tgcatgagttgccaattgaaataaacaagctgacaaggttacgacatctacttgctttccatcgtaactatgaagataaatattctattttaggctttac |
4774 |
T |
|
| Q |
712 |
atctggtgtgaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |
|
|
| T |
4773 |
aactggtgtgctgatggaaaaaggtattaaaa |
4742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 8e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 358 - 743
Target Start/End: Complemental strand, 11116727 - 11116342
Alignment:
| Q |
358 |
ttcacattttcgtgctattcatgtttttgataaagctgggtcgttggagcatttcatgggcaaactgggttcaaagtctcggattttgaaggtacttgac |
457 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||| | ||||||| |||| |||| ||| || || |||||||| | ||||||||| |||| | |
|
|
| T |
11116727 |
ttcacatttccgtgctattcatgtttttgaaaaaggtggattcttggagcctttcctgggtaaattgtgtgcaaagtctagagttttgaaggcactt-at |
11116629 |
T |
|
| Q |
458 |
attcaaggtacatcattaaatcatgtacctaaaaatttggggagtcttttccacttaaggtacttaaacctaaagaatacaaaaatacgtgctcttccta |
557 |
Q |
| |
|
|| ||||||||||| || |||| | | ||| |||||||||||| |||||| ||||| | |||| ||||||| | |||| ||||| ||| | ||||| || |
|
|
| T |
11116628 |
atgcaaggtacatcgttgaatcgtattcctgaaaatttggggaatctttttcacttgaagtacgtaaacctgaggaatgcaaaagtacaggttcttcgta |
11116529 |
T |
|
| Q |
558 |
aatctgttggtgaactacagaactta-gagacactcgatataagatacacacttgtgcgtgagataccaagtcagataaacaagctcacaaagctacgtc |
656 |
Q |
| |
|
||||||||||||| |||||||||||| ||| || | ||| ||||| | |||||||||| ||| ||||||| | ||||||||||| |||||| |||| |
|
|
| T |
11116528 |
aatctgttggtgagctacagaacttaagaggcaatggatttaagagaaacacttgtgcatgaaataccaaatgttataaacaagctgacaaagttacgaa |
11116429 |
T |
|
| Q |
657 |
accttcttgcattacatcgtaactatgaagaaaattattctctgttgggctttacatctggtgtgaagatggaaaaaggtattaaaa |
743 |
Q |
| |
|
| ||||||| || |||||| ||||||||||||| |||||| | |||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
11116428 |
attttcttgctttccatcgttactatgaagaaaaatattctgttttgggctttataactggtgtgcttatggaaaaaggtattaaaa |
11116342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 11116817 - 11116751
Alignment:
| Q |
12 |
tatacccagaggactatgctattagtcatgggagattaattcgacaatggatagctgaagggtttgtt |
79 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11116817 |
tatatccagaggactatgctattaatcacaggagattaactcgac-atggatagctgaagggtttgtt |
11116751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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