View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-6 (Length: 1000)
Name: NF1285-Insertion-6
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 693; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 7 - 978
Target Start/End: Complemental strand, 33116341 - 33115382
Alignment:
| Q |
7 |
accaaacgcattcaacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33116341 |
accaaacgcattcaacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacatt |
33116242 |
T |
|
| Q |
107 |
acggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatactta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116241 |
acggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatactta |
33116142 |
T |
|
| Q |
207 |
tcttttctgaagattcagcttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33116141 |
tcttttctgaagattcagcttccttcaattccattgcaactgattcctataaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcag |
33116042 |
T |
|
| Q |
307 |
aattgcttttccttcctcctctttaccctgtagagacaagcaaaattctgtcacatagtggttgtagcatcgctaaaacactg-ttttgtagcggatttg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||| |||||||||||||||| |
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| T |
33116041 |
aattgcttttccttcctcctctttaccctgtagagacaagcaaaattctgtcacataatgattgtagcatccctaagacactgtttttgtagcggatttg |
33115942 |
T |
|
| Q |
406 |
aacaaactattgattgacaacattggac-aaacaatgtagtttctcacaaaatgaaatatagatgatttaactaacctttcgaaacaaccaacgaggtga |
504 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115941 |
aacaaactattgattgacaacattggacaaaacaatgta----------------------gatgatttaactaacctttcgaaacaaccaacgaggtga |
33115864 |
T |
|
| Q |
505 |
ttctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgttccaggtgcctaaacaaatcaataa |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115863 |
ttctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgttccaggtgcctaaacaaatcaataa |
33115764 |
T |
|
| Q |
605 |
tcaataatgtttaatttaaggtagatacaagattatgaaatgaaatatctaatgaatgaatcacaaatttagtaaaat-aaaaaatgcatggaacgatct |
703 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
33115763 |
tcaataatg------ttaaggtagatagaagattatgaaatgaaatatttaatgaatgaatcacaaatttagtaaaataaaaaaatgcatggaacgatct |
33115670 |
T |
|
| Q |
704 |
tggaattagaaattcttaatcac-aaagttctttcacgacaatttcaacctaaaaggactttcctatttgaaaattttataattatgtggatcattttaa |
802 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
33115669 |
tggaattagaaattcttaatcacaaaagttatttcacgacaatttcaacct-aaaggaccttcctatttgaaaattttataattatgtcaatcattttaa |
33115571 |
T |
|
| Q |
803 |
agcttcatcaataaaagtgtcatgattaacttattttc-ttttac-acgcacaaacaacatgatttcgatat-atgag-aagaa--caaaatcatgatct |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| | ||| ||||| ||||||||||||| |
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|
| T |
33115570 |
agcttcatcaataaaagtgtcatgattaacttattttctttttacaaggcacaaacaacatgatttcgatataaggagaaagaaacaaaaatcatgatct |
33115471 |
T |
|
| Q |
897 |
aatat-atagttttcataccttagtgaag--ccagttgatgagata-gagag-cattgt-ccccagtgatga-aaaactgttgagactt |
978 |
Q |
| |
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||||| ||||||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||||||| ||||| |||||||||| |
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| T |
33115470 |
aatataatagttttcataccttagtgaaggccaagttgatgagataggagagaaattgtcccccagtgatgagaaaaccgttgagactt |
33115382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 33119398 - 33119329
Alignment:
| Q |
99 |
agtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
168 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| |
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|
| T |
33119398 |
agtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
33119329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 299; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 1084071 - 1084381
Alignment:
| Q |
7 |
accaaacgcattcaacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacatt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1084071 |
accaaacgtattcaacccagcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacatt |
1084170 |
T |
|
| Q |
107 |
acggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatactta |
206 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1084171 |
acgatattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtcatcatactta |
1084270 |
T |
|
| Q |
207 |
tcttttctgaagattcagcttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1084271 |
tcttttctgaagattcagcttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcag |
1084370 |
T |
|
| Q |
307 |
aattgcttttc |
317 |
Q |
| |
|
||||||||||| |
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|
| T |
1084371 |
aattgcttttc |
1084381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 21559249 - 21559358
Alignment:
| Q |
62 |
gatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcataca |
161 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||| || |||||||| |||||||||||||| ||||| || |||| ||||||||| | |
|
|
| T |
21559249 |
gatgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatata |
21559348 |
T |
|
| Q |
162 |
aacctcttct |
171 |
Q |
| |
|
|||||||||| |
|
|
| T |
21559349 |
aacctcttct |
21559358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 474 - 598
Target Start/End: Original strand, 21559691 - 21559815
Alignment:
| Q |
474 |
aactaacctttcgaaacaaccaacgaggtgattctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacct |
573 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||| || ||| | || | |||| || || |||| |||||| ||||| | ||||||||| |
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|
| T |
21559691 |
aactaacctttctgaacaaccaacgaggcgattctgggagcataagcatcaatacgatttgtgttaatgccggtactgctgcaacacctaacatccacct |
21559790 |
T |
|
| Q |
574 |
ccatgttccaggtgcctaaacaaat |
598 |
Q |
| |
|
||||||||| ||||||| ||||||| |
|
|
| T |
21559791 |
ccatgttcctggtgcctgaacaaat |
21559815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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