View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1285-Insertion-7 (Length: 865)
Name: NF1285-Insertion-7
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1285-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 387 - 704
Target Start/End: Original strand, 2442999 - 2443318
Alignment:
| Q |
387 |
atagtaaattttcacatgcttatatactacaatgcyagtaatttt--atattgatttcccaaaattttcagattcctgaatataagtctttataaattag |
484 |
Q |
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| T |
2442999 |
atagtaaattttcacatgctcatattctacaatgccagtaattttttatattgatttcccaaaattttcagattcctgaatataagtctttataaattag |
2443098 |
T |
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| Q |
485 |
aggaagtcatttactctaggtattcgtctgttcatcatatttacagattcctgaatcttaaagagataaatgagttggcgaaacatatggtttttacaga |
584 |
Q |
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| T |
2443099 |
aggaagtcattgactctacgtattcctctgttcatcatattttcagattcctgaatcttaa-gagataaatgagttggcgaaacatatggtttttataga |
2443197 |
T |
|
| Q |
585 |
acaccatggcatcgtttaytctgcaacgctagatgaattaactgccatcaacaagcagaagctctcagtactctgtgcactcaataggactaggaggtac |
684 |
Q |
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|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
2443198 |
acaccatggcatcgtttattctgctacgacagatgaattaactgccatcaacaagcagaagctctcagtactctgttcactcaataggactaggaggcac |
2443297 |
T |
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| Q |
685 |
ttgtg-caccttctgaaaata |
704 |
Q |
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||||| ||||||||||||||| |
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| T |
2443298 |
ttgtgtcaccttctgaaaata |
2443318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 732 - 793
Target Start/End: Complemental strand, 9603983 - 9603920
Alignment:
| Q |
732 |
aaaatagtcgcagaatta--actctcctatttggacttatatttatagtcctgaatatactata |
793 |
Q |
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| T |
9603983 |
aaaatagttgcagaattataaccctcctatttggagttatatttatagtcctcaatatattata |
9603920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 25480509 - 25480560
Alignment:
| Q |
103 |
attcaacaagtagaaaccgtaccctgagaagaagttgcaacatcgatgtgat |
154 |
Q |
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| T |
25480509 |
attcaccaagtagaaaccttaccttgagaagaagatgcaacattgatgtgat |
25480560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 25863596 - 25863545
Alignment:
| Q |
103 |
attcaacaagtagaaaccgtaccctgagaagaagttgcaacatcgatgtgat |
154 |
Q |
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| T |
25863596 |
attcaccaagtagaaaccttaccttgagaagaagatgcaacattgatgtgat |
25863545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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