View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1285-Insertion-8 (Length: 346)

Name: NF1285-Insertion-8
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1285-Insertion-8
NF1285-Insertion-8
[»] chr8 (10 HSPs)
chr8 (194-346)||(479475-479627)
chr8 (8-132)||(479689-479813)
chr8 (35-127)||(466743-466835)
chr8 (218-314)||(445767-445863)
chr8 (209-317)||(466564-466672)
chr8 (209-275)||(454890-454956)
chr8 (42-122)||(455041-455121)
chr8 (79-123)||(474232-474276)
chr8 (28-127)||(446009-446108)
chr8 (208-275)||(474072-474139)
[»] chr2 (2 HSPs)
chr2 (206-346)||(27493754-27493894)
chr2 (37-122)||(27493536-27493624)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 479627 - 479475
Alignment:
Q  194 gcaatgaaagagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct 293  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479627 gcaatgaaatagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccct 479528  T
Q  294 gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479527 gcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatc 479475  T

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Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 479813 - 479689
Alignment:
Q  8 taaatatgcgtttatattattattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479813 taaatatgcgtttatattattattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataaga 479714  T
Q  108 gccagaatttctcctatcaagaaac 132  Q
    |||||||||||||||||||||||||    
T  479713 gccagaatttctcctatcaagaaac 479689  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 466835 - 466743
Alignment:
Q  35 agagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa 127  Q
    ||||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||    
T  466835 agagaatggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctcctgtcaa 466743  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 445863 - 445767
Alignment:
Q  218 aaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgc 314  Q
    ||||||||||  |||||||||| ||||||||||| ||||| |||||||| |||||||| |   ||||||| ||||| ||||| | ||||||||||||    
T  445863 aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaagtgcaattcttgtgc 445767  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 466672 - 466564
Alignment:
Q  209 tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattc 308  Q
    ||||| || |||||||| |  |||||||||| ||||||||||| ||||  |||||| |||||||||||||| || |||| ||||| ||||| | | ||||    
T  466672 taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc 466573  T
Q  309 ttgtgccaa 317  Q
    |||||||||    
T  466572 ttgtgccaa 466564  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 454956 - 454890
Alignment:
Q  209 tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaata 275  Q
    ||||| || ||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||    
T  454956 tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaata 454890  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 455121 - 455041
Alignment:
Q  42 ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcct 122  Q
    |||||| ||||||||||||||||| | ||| | | | ||||||||  ||||||||||||||||||||| ||| ||||||||    
T  455121 ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctcct 455041  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 474276 - 474232
Alignment:
Q  79 gaaaaactccttaaatttaaggaataagagccagaatttctccta 123  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  474276 gaaaaactccttaaatttaaggaataagaggcagagtttctccta 474232  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 446108 - 446009
Alignment:
Q  28 tattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaa 127  Q
    |||||||||| |||| |||| |||| ||||||||| || | ||||| | | |||||||||||||| |||||||| || ||| |||| |||||||| ||||    
T  446108 tattactagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcctgtcaa 446009  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 474139 - 474072
Alignment:
Q  208 gtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaata 275  Q
    |||||| || ||||||||||  |||||||||| ||||||||||| ||||  |||||| ||||||||||    
T  474139 gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaata 474072  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 346
Target Start/End: Original strand, 27493754 - 27493894
Alignment:
Q  206 aagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaa 305  Q
    |||||||| || |||||||||||||||||||||| ||||||||||| |||||  || || |||||||||| | | || |||||||||| ||||| |||||    
T  27493754 aagtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaa 27493853  T
Q  306 ttcttgtgccaatacccaaacctgcatatataaactctatc 346  Q
    ||||||| |||| |  ||| |||| |||||| |||| ||||    
T  27493854 ttcttgtaccaagagtcaagcctgaatatattaactgtatc 27493894  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 27493536 - 27493624
Alignment:
Q  37 agaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaat---aagagccagaatttctcct 122  Q
    ||||| ||||| ||||||| |||||| || | ||||| | ||||||||||| |||||||||||||||   | |||||||||||||||||    
T  27493536 agaatagaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaatgggaggagccagaatttctcct 27493624  T

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