View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1285-Insertion-9 (Length: 277)

Name: NF1285-Insertion-9
Description: NF1285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1285-Insertion-9
NF1285-Insertion-9
[»] chr1 (10 HSPs)
chr1 (8-277)||(32883798-32884069)
chr1 (50-277)||(32918200-32918431)
chr1 (181-275)||(32934381-32934475)
chr1 (173-275)||(32950346-32950448)
chr1 (218-274)||(32894894-32894950)
chr1 (48-130)||(32950231-32950313)
chr1 (31-136)||(32934242-32934347)
chr1 (48-103)||(32894722-32894777)
chr1 (43-129)||(19504979-19505065)
chr1 (225-274)||(19504806-19504855)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 32883798 - 32884069
Alignment:
Q  8 atagaatattctcacttatctttataacaattgtttttgctgtttttcttgcagaagtgtaagaccaaagctgacacttgttctttttatggaaatattt 107  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32883798 atagaatattctcacttatctt-ataacaatcgtttttgctgtttt-cttgcagaagtttaagaccaaagctgacacttgttctttttatggaaatattt 32883895  T
Q  108 gtgctttctttgttagggtaagagcaaatnnnnnnntgtatgttata-----gtatggaaatatggaaacataatttgtataatttaaaaatattattgc 202  Q
    ||||||||||||||||||||||| |||||       ||||||||||      |||||||| || ||||||||||||||||||||||||||||||||||||    
T  32883896 gtgctttctttgttagggtaagaacaaataaaaaa-tgtatgttattacattgtatggaagtacggaaacataatttgtataatttaaaaatattattgc 32883994  T
Q  203 aggatcaccatggcactcaatttgtactttgcaagcttaaagtatacttctccaacctttcttgcttccatgttc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32883995 aggatcaccatggcactcaatttgtactttgcaagcttaaagtatacttctccaacctttcttgcttccatgttc 32884069  T

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Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 277
Target Start/End: Original strand, 32918200 - 32918431
Alignment:
Q  50 tttttcttgcagaagtgtaagaccaaagctgacacttgttctttttatggaaatatttgtgctttctttgttagggtaagagcaaatnnnnnnntgtatg 149  Q
    ||||||||||||||  |||||||| ||||||||  ||| ||||||||||||||| | |||||||||||||||||||||||| |||||       ||||||    
T  32918200 tttttcttgcagaaaagtaagacccaagctgacttttgctctttttatggaaatttctgtgctttctttgttagggtaagaacaaataaaaaa-tgtatg 32918298  T
Q  150 ttata-----gtatggaaatatggaaacataatttgtataatttaaaaatattattgcaggatcaccatggcactcaatttgtactttgcaagcttaaag 244  Q
    ||||      |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32918299 ttattacattgtatggaagtatggaaacataaattgtataatttaaaaatattattgcaggatcaccatggcactcaatttgtattttgcaagcttaaag 32918398  T
Q  245 tatacttctccaacctttcttgcttccatgttc 277  Q
    |||||||||||||||||||||||||||||||||    
T  32918399 tatacttctccaacctttcttgcttccatgttc 32918431  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 32934381 - 32934475
Alignment:
Q  181 tataatttaaaaatattattgcaggatcaccatggcactcaatttgtactttgcaagcttaaagtatacttctccaacctttcttgcttccatgt 275  Q
    |||||||| || |||||||||||||||||   || |  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32934381 tataattttaacatattattgcaggatcagtttgtctatcaatttgtactttgcaagcttaaagtatacttctccaacatttcttgcttccatgt 32934475  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 275
Target Start/End: Original strand, 32950346 - 32950448
Alignment:
Q  173 ataatttgtataatttaaaaatattattgcaggatcaccatggcactcaatttgtactttgcaagcttaaagtatacttctccaacctttcttgcttcca 272  Q
    |||||||||||||||| |||||| ||||||||||| |   || |  |||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  32950346 ataatttgtataattttaaaatactattgcaggataagtttgtctatcaatttgtactttgcaagcctgaagtatacttctccaacctttcttgcttcca 32950445  T
Q  273 tgt 275  Q
    |||    
T  32950446 tgt 32950448  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 32894894 - 32894950
Alignment:
Q  218 ctcaatttgtactttgcaagcttaaagtatacttctccaacctttcttgcttccatg 274  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  32894894 ctcaatttgtactttgcaagcttgaagtatacttctccaacctttctttcttccatg 32894950  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 32950231 - 32950313
Alignment:
Q  48 tgtttttcttgcagaagtgtaagaccaaagctgacacttgttctttttatggaaatatttgtgctttctttgttagggtaaga 130  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| |||  |||||| ||||| |||||  |||||||||||||    
T  32950231 tgtttttcttgcagaagtgtaagaccaaagctgacatttgctctctttggggaaatttttgttctttcagtgttagggtaaga 32950313  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 32934242 - 32934347
Alignment:
Q  31 ataacaattgtttttgctgtttttcttgcagaagtgtaagaccaaagctgacacttgttctttttatggaaatatttgtgctttctttgttagggtaaga 130  Q
    |||| ||||||  ||| ||||||||||||||||||| |||||||||||||||| ||| ||||||  |||| || |||||||||||    |||||||||||    
T  32934242 ataaaaattgtacttgttgtttttcttgcagaagtgcaagaccaaagctgacatttgctcttttggtggagatttttgtgctttcagcattagggtaaga 32934341  T
Q  131 gcaaat 136  Q
     |||||    
T  32934342 acaaat 32934347  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 32894722 - 32894777
Alignment:
Q  48 tgtttttcttgcagaagtgtaagaccaaagctgacacttgt-tctttttatggaaat 103  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  32894722 tgtttttcttgcagaagtgtaagaccaaagctgac-cttgtatctttttatggaaat 32894777  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 19505065 - 19504979
Alignment:
Q  43 tttgctgtttttcttgcagaagtgtaagaccaaagctgacacttgttctttttatggaaatatttgtgctttctttgttagggtaag 129  Q
    |||| ||||| |||||||||| ||||||||||||||||||| ||  ||| ||||||||| | ||||||||| |  ||||||||||||    
T  19505065 tttgttgtttctcttgcagaaatgtaagaccaaagctgacattttctctatttatggaattttttgtgcttgcagtgttagggtaag 19504979  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 19504855 - 19504806
Alignment:
Q  225 tgtactttgcaagcttaaagtatacttctccaacctttcttgcttccatg 274  Q
    ||||||||| |||||| ||||| ||||||||||| ||| |||||||||||    
T  19504855 tgtactttgtaagcttcaagtacacttctccaacttttattgcttccatg 19504806  T

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