View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_high_11 (Length: 379)
Name: NF12850_high_11
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 53564371 - 53564732
Alignment:
| Q |
1 |
tataattagggacggaggtagtaatatatattccctccgtccctttttataggagtagtttacaaatttacccaaaatttatagtttttaaaatttattc |
100 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53564371 |
tataattagggacggaggtagtaatatatactctctccgtccctttttataggagtagtttacaaatttaccaaaaatttatagtttttaaaatttattc |
53564470 |
T |
|
| Q |
101 |
tagattaacaacataaagtttttaaattacaatacctaaaaattcaaattttatttcaacaaatcgggcacacaagtttgatggttcaaaatcataaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53564471 |
tagattaacaacataaagtttttaaattacaatacctaaaaattcaaattttatttcaacaaattgggcacacaagtttgatggttcaaaatcataaaca |
53564570 |
T |
|
| Q |
201 |
tgtgactcaaaccaaactaaacaacacttccagatgagttgggtcattgaattgattggatactctcgtacccatgaacactcctatgtgtttttaaaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53564571 |
tgtgactcaaaccaaactaaacaacacttccagatgagttgggtcattgaattgattggatactctcgtacccatgaacactcctatgtgttttttaaaa |
53564670 |
T |
|
| Q |
301 |
catcaactagtgacaatttgtatcaaagtagtgaaatccattgcagaggtaccattttgttc |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53564671 |
catcaactagtgacaatttgtatcaaagtagtgaaatccattgcagaggtaccattttgttc |
53564732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 31893344 - 31893374
Alignment:
| Q |
36 |
tccgtccctttttataggagtagtttacaaa |
66 |
Q |
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| T |
31893344 |
tccgtccctttttataggagtagtttacaaa |
31893374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28501149 - 28501109
Alignment:
| Q |
1 |
tataattagggacggaggtagtaatatatattccctccgtc |
41 |
Q |
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| T |
28501149 |
tataattagggacggaggtagtaataactactccctccgtc |
28501109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 45219703 - 45219669
Alignment:
| Q |
32 |
tccctccgtccctttttataggagtagtttacaaa |
66 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
45219703 |
tccctccgtccctttttataggagtagtttacaaa |
45219669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 32250684 - 32250714
Alignment:
| Q |
36 |
tccgtccctttttataggagtagtttacaaa |
66 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
32250684 |
tccgtccctttttataggagtagtttacaaa |
32250714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 21631122 - 21631152
Alignment:
| Q |
1 |
tataattagggacggaggtagtaatatatat |
31 |
Q |
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|
||||||||||||||||||||||||||||||| |
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|
| T |
21631122 |
tataattagggacggaggtagtaatatatat |
21631152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 27578832 - 27578804
Alignment:
| Q |
38 |
cgtccctttttataggagtagtttacaaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
27578832 |
cgtccctttttataggagtagtttacaaa |
27578804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 35377378 - 35377414
Alignment:
| Q |
26 |
atatattccctccgtccctttttataggagtagttta |
62 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |
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| T |
35377378 |
atatattccttccgtccctttttacaggagtagttta |
35377414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 13598792 - 13598821
Alignment:
| Q |
1 |
tataattagggacggaggtagtaatatata |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13598792 |
tataattagggacggaggtagtaatatata |
13598821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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