View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12850_high_13 (Length: 365)

Name: NF12850_high_13
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12850_high_13
NF12850_high_13
[»] chr8 (19 HSPs)
chr8 (17-354)||(41455887-41456234)
chr8 (197-271)||(13231853-13231927)
chr8 (285-346)||(1839704-1839765)
chr8 (197-263)||(2623253-2623319)
chr8 (282-339)||(13258619-13258676)
chr8 (287-346)||(10878669-10878728)
chr8 (282-332)||(13864990-13865040)
chr8 (293-346)||(9054395-9054448)
chr8 (282-346)||(27085481-27085546)
chr8 (287-350)||(10483033-10483094)
chr8 (283-338)||(28416069-28416122)
chr8 (287-346)||(32158903-32158962)
chr8 (286-340)||(32293-32347)
chr8 (282-348)||(15108146-15108212)
chr8 (288-338)||(37388418-37388468)
chr8 (287-351)||(8948763-8948828)
chr8 (255-283)||(3296687-3296715)
chr8 (197-277)||(33231109-33231189)
chr8 (284-340)||(43733004-43733060)
[»] chr4 (27 HSPs)
chr4 (25-282)||(32641167-32641422)
chr4 (23-280)||(32641764-32642019)
chr4 (194-282)||(12007918-12008006)
chr4 (287-354)||(28880129-28880196)
chr4 (289-340)||(3075654-3075705)
chr4 (189-284)||(12007451-12007546)
chr4 (192-247)||(26305568-26305623)
chr4 (288-346)||(18397052-18397110)
chr4 (282-332)||(36151268-36151318)
chr4 (286-346)||(40422956-40423017)
chr4 (282-338)||(904330-904386)
chr4 (282-338)||(15451229-15451285)
chr4 (282-346)||(21443155-21443219)
chr4 (282-338)||(31418848-31418904)
chr4 (293-340)||(27143364-27143411)
chr4 (282-332)||(32648902-32648952)
chr4 (282-332)||(41844568-41844618)
chr4 (302-340)||(45022427-45022465)
chr4 (205-282)||(2486964-2487041)
chr4 (287-332)||(46176835-46176880)
chr4 (189-246)||(50072022-50072079)
chr4 (283-332)||(50642953-50643002)
chr4 (195-247)||(5474865-5474917)
chr4 (282-346)||(13984858-13984921)
chr4 (282-346)||(18399734-18399798)
chr4 (282-338)||(24662639-24662695)
chr4 (286-330)||(52554898-52554942)
[»] chr1 (26 HSPs)
chr1 (192-276)||(28651687-28651771)
chr1 (174-273)||(28652448-28652546)
chr1 (289-346)||(50097754-50097811)
chr1 (282-346)||(13044471-13044534)
chr1 (282-354)||(43530174-43530246)
chr1 (198-276)||(25476089-25476167)
chr1 (291-352)||(6538129-6538190)
chr1 (282-346)||(5883488-5883552)
chr1 (282-346)||(25561202-25561266)
chr1 (287-346)||(49102859-49102916)
chr1 (288-333)||(52073355-52073400)
chr1 (282-338)||(30543255-30543311)
chr1 (283-338)||(34749907-34749962)
chr1 (287-346)||(50084265-50084324)
chr1 (288-345)||(9861203-9861260)
chr1 (287-340)||(17556930-17556983)
chr1 (305-354)||(19258950-19258999)
chr1 (287-352)||(24436810-24436875)
chr1 (282-355)||(36385472-36385544)
chr1 (289-346)||(38958073-38958130)
chr1 (195-284)||(48621871-48621960)
chr1 (282-346)||(10618956-10619020)
chr1 (282-334)||(12293945-12293997)
chr1 (282-338)||(41432654-41432710)
chr1 (282-354)||(42806303-42806374)
chr1 (282-338)||(50247729-50247785)
[»] chr2 (24 HSPs)
chr2 (282-354)||(15803305-15803377)
chr2 (178-281)||(40056313-40056416)
chr2 (195-276)||(35063612-35063693)
chr2 (195-284)||(38356834-38356923)
chr2 (179-264)||(35064403-35064488)
chr2 (287-346)||(11522066-11522123)
chr2 (282-338)||(30523410-30523466)
chr2 (282-340)||(36030926-36030984)
chr2 (195-256)||(29453646-29453707)
chr2 (287-354)||(36870377-36870442)
chr2 (282-333)||(4666268-4666319)
chr2 (282-332)||(3038845-3038895)
chr2 (287-333)||(8184022-8184068)
chr2 (288-354)||(12941673-12941739)
chr2 (292-354)||(16625681-16625742)
chr2 (210-256)||(26259631-26259677)
chr2 (282-340)||(27987799-27987857)
chr2 (282-340)||(28074332-28074390)
chr2 (200-246)||(41714118-41714164)
chr2 (287-333)||(44656647-44656693)
chr2 (197-276)||(2758461-2758540)
chr2 (282-338)||(33206920-33206976)
chr2 (287-346)||(41503292-41503352)
chr2 (285-333)||(43100465-43100513)
[»] chr6 (7 HSPs)
chr6 (287-346)||(33184304-33184363)
chr6 (174-276)||(19109578-19109680)
chr6 (282-327)||(4089300-4089345)
chr6 (293-340)||(2502214-2502261)
chr6 (282-340)||(33212453-33212512)
chr6 (286-338)||(32549696-32549748)
chr6 (282-340)||(33677156-33677211)
[»] chr5 (21 HSPs)
chr5 (282-346)||(6373271-6373336)
chr5 (282-346)||(4841593-4841657)
chr5 (190-282)||(24153191-24153283)
chr5 (195-284)||(24153973-24154062)
chr5 (282-330)||(9684691-9684739)
chr5 (282-351)||(1934988-1935055)
chr5 (287-353)||(3936457-3936523)
chr5 (287-340)||(15917530-15917583)
chr5 (282-338)||(17668026-17668082)
chr5 (286-333)||(1978280-1978327)
chr5 (287-333)||(3924753-3924799)
chr5 (282-332)||(25027055-25027105)
chr5 (282-332)||(35868963-35869013)
chr5 (189-246)||(17115735-17115792)
chr5 (282-338)||(19337119-19337173)
chr5 (286-330)||(6632785-6632829)
chr5 (287-351)||(9096449-9096512)
chr5 (282-338)||(19389720-19389776)
chr5 (282-338)||(33682505-33682561)
chr5 (166-229)||(35145617-35145681)
chr5 (287-351)||(37110605-37110669)
[»] chr7 (22 HSPs)
chr7 (282-354)||(46611759-46611831)
chr7 (282-346)||(4787886-4787951)
chr7 (282-346)||(22556588-22556652)
chr7 (282-354)||(33187723-33187795)
chr7 (287-340)||(32228906-32228959)
chr7 (282-338)||(14676363-14676419)
chr7 (282-338)||(36845333-36845389)
chr7 (282-338)||(44487227-44487283)
chr7 (282-333)||(38138064-38138115)
chr7 (287-338)||(38679882-38679933)
chr7 (282-332)||(7667063-7667113)
chr7 (282-340)||(12863543-12863601)
chr7 (302-340)||(40985289-40985327)
chr7 (287-333)||(45510480-45510526)
chr7 (286-339)||(3363744-3363797)
chr7 (305-346)||(23552333-23552374)
chr7 (282-346)||(31055485-31055550)
chr7 (287-340)||(38505234-38505287)
chr7 (305-354)||(41471599-41471648)
chr7 (282-331)||(43188990-43189039)
chr7 (282-338)||(23465892-23465948)
chr7 (286-338)||(43230112-43230164)
[»] chr3 (20 HSPs)
chr3 (282-352)||(46891519-46891589)
chr3 (282-346)||(35283220-35283284)
chr3 (290-354)||(36637940-36638004)
chr3 (287-338)||(1132827-1132878)
chr3 (287-346)||(3334002-3334061)
chr3 (282-340)||(53620354-53620412)
chr3 (282-339)||(32720973-32721030)
chr3 (282-338)||(32858963-32859018)
chr3 (287-346)||(3537344-3537403)
chr3 (283-346)||(40674241-40674304)
chr3 (287-346)||(51686644-51686703)
chr3 (178-268)||(45005507-45005597)
chr3 (287-325)||(45898606-45898644)
chr3 (292-350)||(48951923-48951981)
chr3 (305-338)||(37457182-37457215)
chr3 (285-346)||(54089729-54089789)
chr3 (282-338)||(4247250-4247306)
chr3 (282-338)||(15499191-15499247)
chr3 (287-354)||(30697509-30697574)
chr3 (282-338)||(50201701-50201757)
[»] scaffold1763 (1 HSPs)
scaffold1763 (287-338)||(496-547)
[»] scaffold0388 (1 HSPs)
scaffold0388 (287-340)||(7209-7262)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 41455887 - 41456234
Alignment:
Q  17 agtacctcccaatttcagcgtccttaaaactgcacccaaactttttgcaaatgatccttttatgttttcagtttgacgataggtccatgaaactgtgggt 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455887 agtacctcccaatttcagcgtccttaaaactgcaccaaaactttttgcaaatgatccttttatgttttcagtttgacgataggtccatgaaactgtgggt 41455986  T
Q  117 gaaaggnnnnnnnn----caaattaacggatgtgttaacaccgttaacatagaaagggatggttagtctattttacgagaatttaagggaggttagtgta 212  Q
    ||||||            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41455987 gaaaggaaaaaaaaaaaacaaattaacggatgtgttaacaccgttaacataaaaagggatggttagtctattttacgagaacttaagggaggttagtgta 41456086  T
Q  213 agtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccctaagtattaatttatcactttctaaaaaagt 312  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41456087 agtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaattatccctaagtattaatttatcactttttaaaaaagt 41456186  T
Q  313 actctttcaaaaaatgtg------aaatatttcttaatttccccctat 354  Q
    ||||||||||||||||||      ||||||||||||||||||||||||    
T  41456187 actctttcaaaaaatgtgaaatataaatatttcttaatttccccctat 41456234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 13231853 - 13231927
Alignment:
Q  197 aagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtg 271  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||  || |||||||| ||||||||||    
T  13231853 aagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaaccttaagtgaggtgagtg 13231927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 1839765 - 1839704
Alignment:
Q  285 gtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||    
T  1839765 gtattaatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagatttctcaattt 1839704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 2623253 - 2623319
Alignment:
Q  197 aagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaaggga 263  Q
    ||||||||||||||||||||| ||||||||| | | ||||||||||||||| ||| |||||| ||||    
T  2623253 aagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaaccttagggga 2623319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 13258619 - 13258676
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttc 339  Q
    |||| |||||||||||| | ||||||||| |||||||||||||||||||||| |||||    
T  13258619 taagcattaatttatcattctctaaaaaaatactctttcaaaaaatgtgaaagatttc 13258676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 10878728 - 10878669
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||||| ||||||||| ||||||||||||||| || ||| |||||| |||||    
T  10878728 attaatttatcactctctaaaaaaatactctttcaaaaaaagttaaagatttctcaattt 10878669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 13865040 - 13864990
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||||||||||| ||||||||||| |  ||||||||||||||||||    
T  13865040 taagtattaatttatcattttctaaaaaactgttctttcaaaaaatgtgaa 13864990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 9054448 - 9054395
Alignment:
Q  293 ttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||| ||||||||| || ||||||||||||||||||| |||||| |||||    
T  9054448 ttatcactatctaaaaaaatattctttcaaaaaatgtgaaagatttctcaattt 9054395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 27085481 - 27085546
Alignment:
Q  282 taagtattaatttatcactttctaaaaaag-tactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||||||| |||||||||  ||||||||||| |||||||||| |||||| |||||    
T  27085481 taagcattaatttatcactctctaaaaaaaatactctttcaacaaatgtgaaagatttctcaattt 27085546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 10483094 - 10483033
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttcccc 350  Q
    |||||||||||| |||||||||||  || |||||||||||||| ||| ||||||| ||||||||    
T  10483094 attaatttatcattttctaaaaaa--acactttcaaaaaatgtaaaagatttcttcatttcccc 10483033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 28416122 - 28416069
Alignment:
Q  283 aagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||||||| ||||    
T  28416122 aagtattaatttatcact--ctaaacaaatactctttcaaaaaatgtgaaagattt 28416069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 32158903 - 32158962
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||| ||| ||||||||| ||||||||  |||||||||||| |||||| |||||    
T  32158903 attaatttattactctctaaaaaaatactctttacaaaaatgtgaaagatttctcaattt 32158962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 32293 - 32347
Alignment:
Q  286 tattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    ||||||||  ||||| ||| ||||| |||||||||||||||||||||| ||||||    
T  32293 tattaattagtcactctcttaaaaactactctttcaaaaaatgtgaaagatttct 32347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 15108212 - 15108146
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttcc 348  Q
    ||||| ||||||||||| | ||||||||| || ||||||||||||| ||||| |||| ||| |||||    
T  15108212 taagtgttaatttatcattctctaaaaaattattctttcaaaaaatatgaaagattttttattttcc 15108146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 37388418 - 37388468
Alignment:
Q  288 ttaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||| | ||||||||  |||||||||||||||||||||| ||||    
T  37388418 ttaatttatcattctctaaaaatttactctttcaaaaaatgtgaaagattt 37388468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 8948763 - 8948828
Alignment:
Q  287 attaatttatcactttctaaaaaag-tactctttcaaaaaatgtgaaatatttcttaatttccccc 351  Q
    ||||||| |||||| |||||||||  ||||| ||||||| |||||||| |||||||||||| ||||    
T  8948763 attaattgatcactctctaaaaaaaatactccttcaaaatatgtgaaagatttcttaattttcccc 8948828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 3296687 - 3296715
Alignment:
Q  255 cttaagggaggtgagtgtaattatcccta 283  Q
    |||||||||||||||||||||||||||||    
T  3296687 cttaagggaggtgagtgtaattatcccta 3296715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 33231189 - 33231109
Alignment:
Q  197 aagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaatta 277  Q
    ||||||||||  || | |||| ||||||||||| | ||  ||||||||||| ||||||||||  ||||||| |||||||||    
T  33231189 aagggaggtttatgcatgttttaaaattagaggggatgctagtgtcattttaatagaccttagaggaggtgtgtgtaatta 33231109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 43733060 - 43733004
Alignment:
Q  284 agtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    ||||||| ||||||| | ||||||||| | ||||| |||||||||||||| ||||||    
T  43733060 agtattagtttatcattatctaaaaaattgctcttccaaaaaatgtgaaagatttct 43733004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 282
Target Start/End: Complemental strand, 32641422 - 32641167
Alignment:
Q  25 ccaatttcagcgtccttaaaactgcacccaaactttttgcaaatgatccttttatgttttcagtttgacgataggtccatgaaactgtgggtgaaaggnn 124  Q
    ||||||||||||||||||||||||||| ||| |||| | ||||| |||  || ||||||| ||||||||||| |||||||||||||| ||||||||||      
T  32641422 ccaatttcagcgtccttaaaactgcactcaagctttctacaaataatcaatt-atgttttaagtttgacgatgggtccatgaaactgagggtgaaaggga 32641324  T
Q  125 nnnnnncaaattaacggatgtgttaacaccgttaacatagaaagggatgg-ttagtctattttacgagaatttaagggaggttagtgtaagtttaaaaat 223  Q
          |||||||| |||    ||||||||||||| |||||||||||||  || | |||||||| ||||| |||||||| |||||||||| ||| |||||    
T  32641323 aaaaaacaaattaaaggaaaa-ttaacaccgttaa-atagaaagggatgtattcgcctattttatgagaacttaagggatgttagtgtaatttttaaaat 32641226  T
Q  224 tagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccct 282  Q
    ||||||||||||||||||||||| ||||||| | | | |||||| ||||||||||||||    
T  32641225 tagaggaggtgtcagtgtcatttacatagacttcaggagaggtgggtgtaattatccct 32641167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 32641764 - 32642019
Alignment:
Q  23 tcccaatttcagcgtccttaaaactgcacccaaactttttgca--aatgatccttttatgttttcagtttgacgataggtccatgaaactgtgggtgaaa 120  Q
    |||| |||||| |||||||||||||||||| ||||||| | ||  |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||    
T  32641764 tcccgatttcaacgtccttaaaactgcacctaaactttctacacaaatgatccctttatgttttcagtttgacgatgggtccatgaaactgagggtgaaa 32641863  T
Q  121 ggnnnnnnnncaaattaacggatgtgttaacaccgttaacatagaaagggatg-gttagtctattttacgagaatttaagggaggttagtgtaagtttaa 219  Q
    ||        |||||||| | |    ||||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||| | ||||||| |    
T  32641864 gg-aaaaaaacaaattaatgaa--aattaacaccgttaa-atagaaaggggtgtgttagtctattttatgagaatttaagggaggttaatataagtttta 32641959  T
Q  220 aaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatcc 280  Q
    |||||| ||| || || |||||||||| ||||||| |   |||||||||||||||||||||    
T  32641960 aaattaaagg-ggggttagtgtcatttacatagacttcgggggaggtgagtgtaattatcc 32642019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 12007918 - 12008006
Alignment:
Q  194 tttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccct 282  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||  || | |||| |||||||| |||||||| |||||    
T  12007918 tttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttccct 12008006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 28880129 - 28880196
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| ||||| |||||||    
T  28880129 attaatttatcactctctaaaaaaatactctttcaaaaaatgtaaaagatttctcaattttcccctat 28880196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 3075705 - 3075654
Alignment:
Q  289 taatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||| ||||||    
T  3075705 taatttatcactttataaaaaaatacgctttcaaaaaatgtgaaagatttct 3075654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 12007546 - 12007451
Alignment:
Q  189 gagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccctaa 284  Q
    ||||| ||||| ||||||| |||| |||| |||| |||||| |||||||||||||||||  || ||| || |||||||  |||||||| |||||||    
T  12007546 gagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattttagtaaaccataggggaggttggtgtaattttccctaa 12007451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 26305623 - 26305568
Alignment:
Q  192 aatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcatttt 247  Q
    |||||| ||||| ||| ||||||||| |||||||||||||||||| ||||||||||    
T  26305623 aatttatgggagattaatgtaagttttaaaattagaggaggtgtcggtgtcatttt 26305568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 18397052 - 18397110
Alignment:
Q  288 ttaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    ||||||||||||| | ||| ||| |||||||||||||||||||||| |||||| |||||    
T  18397052 ttaatttatcactctttaagaaaatactctttcaaaaaatgtgaaagatttctcaattt 18397110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 36151318 - 36151268
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||| ||||||| ||||||||||| || ||||||||||||||||||    
T  36151318 taagtattagtttatcattttctaaaaaactattctttcaaaaaatgtgaa 36151268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 40423017 - 40422956
Alignment:
Q  286 tattaatttatcactttctaaaaaag-tactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    ||||||||||||||| |||||||||  |||||||||||||| ||||||| |||||| |||||    
T  40423017 tattaatttatcactctctaaaaaaaatactctttcaaaaattgtgaaagatttctcaattt 40422956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 904330 - 904386
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||| ||||||| | ||||||||| || |||||||||||||||||| |||||    
T  904330 taagtattagtttatcattctctaaaaaactattctttcaaaaaatgtgaattattt 904386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 15451285 - 15451229
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||| | | ||||||| |||||||||||||||||||||| ||||    
T  15451285 taagcattaatttatcattatttaaaaaattactctttcaaaaaatgtgaaagattt 15451229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 21443155 - 21443219
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| ||||||||||||| | |||||||  |||||||||||||||| ||||| |||| |||||||    
T  21443155 taagcattaatttatcacctactaaaaacatactctttcaaaaaatatgaaagatttattaattt 21443219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 31418904 - 31418848
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||||| |||||| || |||||||||||||| ||||||| ||||    
T  31418904 taagcattaatttatcactctctaaacaaatactctttcaaaaactgtgaaagattt 31418848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 27143364 - 27143411
Alignment:
Q  293 ttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||| ||||| ||| |||||||||||||||||||||| ||||||    
T  27143364 ttatcactctctaagaaaatactctttcaaaaaatgtgaaagatttct 27143411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 32648952 - 32648902
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||| ||||||| | ||||||||| | |||||||||||||||||||    
T  32648952 taagtattagtttatcattctctaaaaaactgctctttcaaaaaatgtgaa 32648902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 41844568 - 41844618
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||||||||||| | ||||||||| |  ||||||||||||||||||    
T  41844568 taagtattaatttatcattctctaaaaaattgttctttcaaaaaatgtgaa 41844618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 45022465 - 45022427
Alignment:
Q  302 tctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  45022465 tctaaaaaaatactctttcaaaaaatgtgaaagatttct 45022427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 2486964 - 2487041
Alignment:
Q  205 ttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccct 282  Q
    ||||||| ||||| |||| |||| | |||||||||||| |||| ||||||||||  |||||| | ||||||| |||||    
T  2486964 ttagtgttagttttaaaactagaaggggtgtcagtgtcgttttaatagaccttagtggaggtcattgtaattttccct 2487041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 46176880 - 46176835
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    |||| ||||||| | ||||||||| |||||||||||||||||||||    
T  46176880 attagtttatcattctctaaaaaaatactctttcaaaaaatgtgaa 46176835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 50072022 - 50072079
Alignment:
Q  189 gagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattt 246  Q
    ||||| |||||||||||| |||||||||| |||| || ||| ||||| ||||||||||    
T  50072022 gagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtcattt 50072079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 50642953 - 50643002
Alignment:
Q  283 aagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    |||||||| ||||||| ||||||||||| |  ||||||||||||||||||    
T  50642953 aagtattagtttatcattttctaaaaaactgttctttcaaaaaatgtgaa 50643002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 5474865 - 5474917
Alignment:
Q  195 ttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcatttt 247  Q
    |||||||||||| |||||||||| ||||| ||||| | ||| |||||||||||    
T  5474865 ttaagggaggttggtgtaagttttaaaataagaggggttgttagtgtcatttt 5474917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 13984921 - 13984858
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||| ||| ||||||||| |||||||||||||||| ||||| ||| || |||||    
T  13984921 taagcattaatttattactctctaaaaaa-tactctttcaaaaaatatgaaagattcctcaattt 13984858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 18399734 - 18399798
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||| ||| | ||| ||| |||||||||||||||| ||||| |||||| |||||    
T  18399734 taagcattaatttattactctttaagaaaatactctttcaaaaaatttgaaagatttctcaattt 18399798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 24662695 - 24662639
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| ||| |||||||| | ||||||||| |||||||||| ||||||||||| ||||    
T  24662695 taagcattgatttatcattctctaaaaaattactctttcagaaaatgtgaaagattt 24662639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 52554942 - 52554898
Alignment:
Q  286 tattaatttatcactttctaaaaaagtactctttcaaaaaatgtg 330  Q
    ||||||||||||| ||| ||||||| |||||||| ||||||||||    
T  52554942 tattaatttatcattttataaaaaattactcttttaaaaaatgtg 52554898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 28651771 - 28651687
Alignment:
Q  192 aatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaatt 276  Q
    |||||||||||||||| ||||||||| |||| |||||| ||||||||||||||||| |||||||| | ||||||||| |||||||    
T  28651771 aatttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacctcaggggaggtgattgtaatt 28651687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 28652448 - 28652546
Alignment:
Q  174 gttagtctattttacgagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgta 273  Q
    ||||||||||||||  | |||||||||||||||||||||||||| |||| |||||| ||||||| ||| |||||  || |||| ||||||||||| ||||    
T  28652448 gttagtctattttataaaaatttaagggaggttagtgtaagttttaaaaatagagg-ggtgtcaatgttattttagtaaacctcaagggaggtgactgta 28652546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 50097754 - 50097811
Alignment:
Q  289 taatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||    
T  50097754 taatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagatttctcaattt 50097811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 13044534 - 13044471
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||    
T  13044534 taagcattaatttatcactctctaaaaaa-tactcttttaaaaaatgtgaaagatttcttaattt 13044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 43530246 - 43530174
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||| |||||||||||||| |||||||||  ||||||| ||||||||||||| |||||| ||||| |||||||    
T  43530246 taagcattaatttatcactctctaaaaaaacactcttttaaaaaatgtgaaagatttctcaattttcccctat 43530174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 25476089 - 25476167
Alignment:
Q  198 agggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaatt 276  Q
    ||||||||| |||||||||| |||| ||||||  |||||||||||||||| ||| |||| | ||||||||| |||||||    
T  25476089 agggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacctcaggggaggtgaatgtaatt 25476167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 6538129 - 6538190
Alignment:
Q  291 atttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccct 352  Q
    |||||||||| ||||||||| |||||||||||||||| ||||| |||||| ||||| |||||    
T  6538129 atttatcactctctaaaaaaatactctttcaaaaaatatgaaagatttctcaattttcccct 6538190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 5883552 - 5883488
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    ||||||||||||||||||| ||||| |||  ||||||||||||||| ||||| |||||| |||||    
T  5883552 taagtattaatttatcactctctaacaaaagactctttcaaaaaatatgaaaaatttctcaattt 5883488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 25561266 - 25561202
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| ||||| ||||||||  |||||||| |||||||||||||||||||||| |||||| |||||    
T  25561266 taagcattaacttatcactcgctaaaaaaatactctttcaaaaaatgtgaaagatttctcaattt 25561202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 49102916 - 49102859
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||| |||||| |||||    
T  49102916 attaatttatcact--ctaaaaaaatactctttcaaaaaatgtgaaagatttctcaattt 49102859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 52073400 - 52073355
Alignment:
Q  288 ttaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    ||||||||||| | ||||||||| ||||||||||||||||||||||    
T  52073400 ttaatttatcattctctaaaaaattactctttcaaaaaatgtgaaa 52073355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 30543311 - 30543255
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||||||||| | ||||||||| || ||||||||||||||| ||| ||||    
T  30543311 taagtattaatttatcattctctaaaaaattattctttcaaaaaatgtaaaagattt 30543255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 34749962 - 34749907
Alignment:
Q  283 aagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| ||||||||||| | |||||||||  ||||||||||||||||||||| ||||    
T  34749962 aagttttaatttatcattctctaaaaaatcactctttcaaaaaatgtgaaagattt 34749907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 50084265 - 50084324
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||||| | ||| |||  ||||||||||||||||||||| |||||| |||||    
T  50084265 attaatttatcactctttaagaaaacactctttcaaaaaatgtgaaaaatttctcaattt 50084324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 9861260 - 9861203
Alignment:
Q  288 ttaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatt 345  Q
    ||||||||||||| |||| |||| |||| ||||||||| ||||||| |||||| ||||    
T  9861260 ttaatttatcactctctagaaaaatactttttcaaaaactgtgaaagatttctcaatt 9861203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 17556930 - 17556983
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||||||||| ||||| |||  ||||||| ||||||||||||| ||||||    
T  17556930 attaatttatcactctctaagaaaacactctttaaaaaaatgtgaaagatttct 17556983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 19258999 - 19258950
Alignment:
Q  305 aaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||||| || ||||||||||||||||||| |||||| ||||||| |||||    
T  19258999 aaaaaaatattctttcaaaaaatgtgaaagatttctcaatttcctcctat 19258950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 24436875 - 24436810
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccct 352  Q
    |||||||||||||| ||||||||| | ||||| |||||||  ||||| |||||| ||||| |||||    
T  24436875 attaatttatcactctctaaaaaaattctcttccaaaaaacatgaaaaatttctcaattttcccct 24436810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 36385472 - 36385544
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctatg 355  Q
    ||||||||||||||||||| | |||| ||  ||| ||||||||||||||||| |||||| |||||  |||||||    
T  36385472 taagtattaatttatcactctttaaataaa-actatttcaaaaaatgtgaaagatttctcaatttttccctatg 36385544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 38958130 - 38958073
Alignment:
Q  289 taatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||| |||  |||||| |||||||||||||||||||||| | ||||| ||||    
T  38958130 taatttatcatttttaaaaaaaatactctttcaaaaaatgtgaaagacttcttcattt 38958073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 48621871 - 48621960
Alignment:
Q  195 ttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccctaa 284  Q
    |||||||||||||||||| ||||  ||| || ||| |||||  |||||||||  | | | |||||||||||||| ||||||| |||||||    
T  48621871 ttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtcatttcaacatatcttaagggaggtgattgtaattttccctaa 48621960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 10618956 - 10619020
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| ||| |||||||||| |||||||||  || |||||| ||||||||||| |||||| |||||    
T  10618956 taagcattcatttatcactctctaaaaaaagaccctttcagaaaatgtgaaagatttctcaattt 10619020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 12293945 - 12293997
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaat 334  Q
    ||||||||| ||||||| | ||||||||| |  ||||||||||||||||||||    
T  12293945 taagtattagtttatcattctctaaaaaactgttctttcaaaaaatgtgaaat 12293997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 41432710 - 41432654
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||||||| | | ||||||||| ||||||| ||||||| |||||| ||||    
T  41432710 taagtattaatttattattctctaaaaaattactcttgcaaaaaacgtgaaagattt 41432654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 42806303 - 42806374
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    ||||||||||||||||||| ||||||||| || | ||| ||||||||| ||| | |||| ||||| |||||||    
T  42806303 taagtattaatttatcactctctaaaaaaatattattt-aaaaaatgtaaaaaaattctcaatttacccctat 42806374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 50247729 - 50247785
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||| ||||||| | ||||||||| || ||||| |||||||||||| |||||    
T  50247729 taagtattagtttatcattctctaaaaaactattcttttaaaaaatgtgaattattt 50247785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 15803305 - 15803377
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||| |||||||    
T  15803305 taagcattaatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagatttctcaattttcccctat 15803377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 40056416 - 40056313
Alignment:
Q  178 gtctattttacgagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaatta 277  Q
    ||||||| || ||||| ||||||||||||| |||||||||  ||| |||| | ||||| ||||||||||||||| |||| |  ||||||||||||||||     
T  40056416 gtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggaggtgagtgtaattt 40056317  T
Q  278 tccc 281  Q
    ||||    
T  40056316 tccc 40056313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 35063693 - 35063612
Alignment:
Q  195 ttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaatt 276  Q
    ||||||||||||  ||||||||| |||| ||||||  ||||||||| |||||| ||| |||| |||||||||||||||||||    
T  35063693 ttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggtgagtgtaatt 35063612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 38356923 - 38356834
Alignment:
Q  195 ttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccctaa 284  Q
    ||||||||||||| |||| |||| |||| |||||| |||||  ||||||| || |||||||| | ||||||||||||||||| |||||||    
T  38356923 ttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtgtaattttccctaa 38356834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 35064403 - 35064488
Alignment:
Q  179 tctattttacgagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggag 264  Q
    ||||||| | |||||||||||||| |||||||| ||||| |||| |||||| | ||| ||||||||||| ||| || |||||||||    
T  35064403 tctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaactttaagggag 35064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 11522123 - 11522066
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||| |||||| |||||    
T  11522123 attaatttatcact--ctaaaaaaatactctttcaaaaaatgtgaaagatttctcaattt 11522066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 30523410 - 30523466
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||||||||| | | ||||||| |||||||||||||||||||||| ||||    
T  30523410 taagtattaatttatcattctttaaaaaactactctttcaaaaaatgtgaaagattt 30523466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 36030926 - 36030984
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||| |||||||||||| | ||||||||| ||||||||| |||||||||||| ||||||    
T  36030926 taagcattaatttatcattctctaaaaaaatactctttccaaaaatgtgaaagatttct 36030984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 29453646 - 29453707
Alignment:
Q  195 ttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagacct 256  Q
    |||| |||||||| ||||||||| |||| |||||||||||| ||||| ||||||||| ||||    
T  29453646 ttaaaggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacct 29453707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 36870377 - 36870442
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||||||||||||| ||||||||| ||  |||||||||| ||||||| |||||| ||||| |||||||    
T  36870377 attaatttatcactctctaaaaaaata--ctttcaaaaattgtgaaaaatttctcaattttcccctat 36870442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 4666268 - 4666319
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    |||| |||||||||||||| ||||| ||| |||||||||||||||| |||||    
T  4666268 taagcattaatttatcactctctaataaaatactctttcaaaaaatatgaaa 4666319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 3038895 - 3038845
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||| ||||||| ||||||||||| |  ||||||||||||||||||    
T  3038895 taagtattagtttatcattttctaaaaaattgttctttcaaaaaatgtgaa 3038845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 8184068 - 8184022
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    |||||||||||| | ||||||||| ||||||||||||||||| ||||    
T  8184068 attaatttatcattctctaaaaaattactctttcaaaaaatgcgaaa 8184022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 12941739 - 12941673
Alignment:
Q  288 ttaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    ||||||||||||| ||| ||||| || | ||||||||||| ||||| |||||| ||||| |||||||    
T  12941739 ttaatttatcactctctgaaaaaatattttttcaaaaaatttgaaagatttctgaattttcccctat 12941673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 16625742 - 16625681
Alignment:
Q  292 tttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    ||||||| | ||||||||| |||||||||||||||||||||| ||||||  ||||||| ||||    
T  16625742 tttatcattctctaaaaaa-tactctttcaaaaaatgtgaaagatttctccatttccctctat 16625681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 26259631 - 26259677
Alignment:
Q  210 gtaagtttaaaaattagaggaggtgtcagtgtcattttcatagacct 256  Q
    |||||||| |||||||||  |||||| ||||||||||||||||||||    
T  26259631 gtaagttttaaaattagacaaggtgttagtgtcattttcatagacct 26259677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 27987799 - 27987857
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||| |||||||||||||| |||| ||||  |||||||||| |||||||||| ||||||    
T  27987799 taagcattaatttatcactctctacaaaaacactctttcaacaaatgtgaaagatttct 27987857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 28074332 - 28074390
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||| |||||||||||||| |||| ||||  |||||||||| |||||||||| ||||||    
T  28074332 taagcattaatttatcactctctacaaaaacactctttcaacaaatgtgaaagatttct 28074390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 41714164 - 41714118
Alignment:
Q  200 ggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattt 246  Q
    |||||||||||||||||| ||||||||||||| |||  |||||||||    
T  41714164 ggaggttagtgtaagttttaaaattagaggagatgttggtgtcattt 41714118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 44656693 - 44656647
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    |||||||||||||| ||||||||| |||| |||| ||||||||||||    
T  44656693 attaatttatcactatctaaaaaattactttttcgaaaaatgtgaaa 44656647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 2758461 - 2758540
Alignment:
Q  197 aagggaggttagtgta-agtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaatt 276  Q
    |||||||||||||||  ||||||||| ||||||| | ||| ||||| ||||    ||||||||||||||||||||||||||    
T  2758461 aagggaggttagtgtttagtttaaaa-ttagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaatt 2758540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 33206920 - 33206976
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| ||||||||| || | |||||||||  ||||||||||||||||||||| ||||    
T  33206920 taagcattaatttaacattctctaaaaaaacactctttcaaaaaatgtgaaagattt 33206976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 41503292 - 41503352
Alignment:
Q  287 attaatttatcactttctaaa-aaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||| | |||||| ||| |||||||||||||||||| ||| ||||||| ||||    
T  41503292 attaatttatcattctctaaacaaactactctttcaaaaaatgtaaaaaatttcttcattt 41503352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 43100513 - 43100465
Alignment:
Q  285 gtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    |||||||||||||| | ||||| ||| |||||||||||||||| |||||    
T  43100513 gtattaatttatcattctctaataaaatactctttcaaaaaatatgaaa 43100465  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 33184304 - 33184363
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||    
T  33184304 attaatttatcactctctaaaaaaatactctttcaaaaaatatgaaagatttcttaattt 33184363  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 19109578 - 19109680
Alignment:
Q  174 gttagtctattttacgagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgta 273  Q
    |||| |||||||||  | || ||||||||||||| ||||||||| |||| |||||| | ||||| ||| ||||| |||||||||  ||||||||| ||||    
T  19109578 gttaatctattttataaaaacttaagggaggttattgtaagttttaaaaatagaggggatgtcaatgttattttgatagaccttgggggaggtgactgta 19109677  T
Q  274 att 276  Q
    |||    
T  19109678 att 19109680  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 4089345 - 4089300
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaat 327  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||    
T  4089345 taagtattaatttatcactatctagaaaaatactctttcaaaaaat 4089300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 2502261 - 2502214
Alignment:
Q  293 ttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||| ||||| ||| |||||||||||||||||||||| ||||||    
T  2502261 ttatcactctctaagaaaatactctttcaaaaaatgtgaaagatttct 2502214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 33212453 - 33212512
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttc-aaaaaatgtgaaatatttct 340  Q
    ||||||||| ||||||||| ||||||||| || |||||| ||||||||||||| ||||||    
T  33212453 taagtattagtttatcactatctaaaaaattaatctttcaaaaaaatgtgaaagatttct 33212512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 32549748 - 32549696
Alignment:
Q  286 tattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||||| |||||| |||| ||||||||||| |||||| ||| ||||    
T  32549748 tattaatttatcattttctagaaaactactctttcaagaaatgtaaaagattt 32549696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 33677156 - 33677211
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||| |||||||||||||| |||||||   |||||||||||||||||||| | ||||||    
T  33677156 taagcattaatttatcactctctaaaa---tactctttcaaaaaatgtgacagatttct 33677211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 6373271 - 6373336
Alignment:
Q  282 taagtattaatttatcactttctaaaaaa-gtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||| ||| |||||| |||||    
T  6373271 taagtattaatttatcactttctaaaaaacatactctttcaaaaaatgtaaaagatttctcaattt 6373336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 4841657 - 4841593
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||||||| | ||||||| |||||||| ||||||||||||| ||||||||||||    
T  4841657 taagcattaatttatcactctataaaaaaatactctttaaaaaaatgtgaaagatttcttaattt 4841593  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 24153283 - 24153191
Alignment:
Q  190 agaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccct 282  Q
    |||| ||||||||||||||||| | ||| |||| |||||  |||||| || ||||||| |||||||| |||| |||||||||||||| |||||    
T  24153283 agaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctcaaggaaggtgagtgtaattttccct 24153191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 24153973 - 24154062
Alignment:
Q  195 ttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtgagtgtaattatccctaa 284  Q
    ||||||||||||| ||| ||||| |||| |||||| ||| | | ||||||||| ||| |||||| |||||||||||||| || |||||||    
T  24153973 ttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggtgagtgtagttttccctaa 24154062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 9684739 - 9684691
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtg 330  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  9684739 taagcattaatttatcattttctaaaaaattactctttcaaaaaatgtg 9684691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 1935055 - 1934988
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccc 351  Q
    |||| ||||||||||||||  |||||||| || ||||| ||||||||||||| |||||| ||||||||||    
T  1935055 taagcattaatttatcact--ctaaaaaaatagtcttttaaaaaatgtgaaagatttctcaatttccccc 1934988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 3936523 - 3936457
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttcccccta 353  Q
    |||||||| ||||| ||||| ||| |||||||||||||| | ||||| |||||||||||| ||||||    
T  3936523 attaatttttcactctctaagaaaatactctttcaaaaattatgaaagatttcttaattttccccta 3936457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 15917530 - 15917583
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||||||||| |||| |||| |||||||||||||||| ||||| ||||||    
T  15917530 attaatttatcactctctacaaaaatactctttcaaaaaatatgaaagatttct 15917583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 17668082 - 17668026
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||| |  |||||||| |||||||||||||||||||||| ||||    
T  17668082 taagcattaatttatcattccctaaaaaattactctttcaaaaaatgtgaaagattt 17668026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 1978280 - 1978327
Alignment:
Q  286 tattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    ||||| ||||||| ||||||||||| ||||||| ||||||||||||||    
T  1978280 tattagtttatcattttctaaaaaattactcttccaaaaaatgtgaaa 1978327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 3924799 - 3924753
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||||||    
T  3924799 attaatttatcattctctaaaaaattactcttccaaaaaatgtgaaa 3924753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 25027055 - 25027105
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||| ||||||| | ||||||||| || ||||||||||||||||||    
T  25027055 taagtattagtttatcattctctaaaaaattattctttcaaaaaatgtgaa 25027105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 35868963 - 35869013
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||| ||||||| | ||||||||| || ||||||||||||||||||    
T  35868963 taagtattagtttatcattctctaaaaaactattctttcaaaaaatgtgaa 35869013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 17115792 - 17115735
Alignment:
Q  189 gagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattt 246  Q
    ||||| |||||||||||| |||||||||| |||| |||||  ||||| ||||||||||    
T  17115792 gagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtcattt 17115735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 19337173 - 19337119
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||||| ||||||||  |||||||| ||||||||||||| ||||    
T  19337173 taagcattaatttatcactctctaaaaa--tactcttttaaaaaatgtgaaaaattt 19337119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 6632785 - 6632829
Alignment:
Q  286 tattaatttatcactttctaaaaaagtactctttcaaaaaatgtg 330  Q
    ||||||||||||||| ||||||||| |||| ||| ||||||||||    
T  6632785 tattaatttatcactctctaaaaaaatacttttttaaaaaatgtg 6632829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 9096449 - 9096512
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccc 351  Q
    |||||||||||| | ||||||||| |||| ||||||||||||||| | ||||||  |||||||||    
T  9096449 attaatttatcattctctaaaaaa-tactttttcaaaaaatgtgacaaatttctccatttccccc 9096512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 19389776 - 19389720
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||| | ||||||||| || ||||||||||| ||||||| ||||    
T  19389776 taagcattaatttatcattctctaaaaaattaatctttcaaaaattgtgaaagattt 19389720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 33682505 - 33682561
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||| ||| ||||||||||| |||||| | ||||||||||||| ||||    
T  33682505 taagcattaatttttcattttctaaaaaattactctataaaaaaatgtgaaagattt 33682561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 35145681 - 35145617
Alignment:
Q  166 aagggatg-gttagtctattttacgagaatttaagggaggttagtgtaagtttaaaaattagagg 229  Q
    |||||||| ||| |||||||||| ||||| |  |||||||||||||||||||| |||| ||||||    
T  35145681 aagggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactagagg 35145617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 37110605 - 37110669
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccc 351  Q
    ||||||||||||   ||||||||  |||| ||||||||||||||||| |||| | ||||||||||    
T  37110605 attaatttatcatcatctaaaaatatactttttcaaaaaatgtgaaagatttatcaatttccccc 37110669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 46611831 - 46611759
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    ||||||||| ||||||||| ||||||||| |  ||||||||||||||||||| |||| | |||||||||||||    
T  46611831 taagtattagtttatcactctctaaaaaaattatctttcaaaaaatgtgaaagatttatcaatttccccctat 46611759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 4787951 - 4787886
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagt-actctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||||||||| |||||| |||||    
T  4787951 taagcattaatttatcactctctaaaaaaattactctttcaaaaaatgtgaaaaatttctcaattt 4787886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 22556652 - 22556588
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||| ||||||||| ||||||||| |||||||| ||||||||||||| |||||| |||||    
T  22556652 taagcattagtttatcactctctaaaaaaatactcttttaaaaaatgtgaaagatttctcaattt 22556588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 33187795 - 33187723
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||| |||||||||||||  ||||| ||| ||||||||||||| ||||||||||||| | ||||| |||||||    
T  33187795 taagcattaatttatcaccctctaagaaaatactctttcaaaagatgtgaaatatttttcaattttcccctat 33187723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 32228906 - 32228959
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||||||||| ||| || || |||||||||||||||||||||| ||||||    
T  32228906 attaatttatcactctcttaataaatactctttcaaaaaatgtgaaagatttct 32228959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 14676363 - 14676419
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||| |  |||||||| |||||||||||||||||||||| ||||    
T  14676363 taagcattaatttatcattccctaaaaaattactctttcaaaaaatgtgaaagattt 14676419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 36845389 - 36845333
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||||||||||||| || | ||||||||  | |||||||||||||||||||||||||    
T  36845389 taagtattaatttaacattctctaaaaagtttctctttcaaaaaatgtgaaatattt 36845333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 44487283 - 44487227
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||||| ||||||||| |||||| | ||||||||||||| ||||    
T  44487283 taagcattaatttatcactctctaaaaaaatactctataaaaaaatgtgaaagattt 44487227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 38138064 - 38138115
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    |||| |||||||||||| | ||||||||| |||||| |||||||||||||||    
T  38138064 taagcattaatttatcattctctaaaaaaatactctatcaaaaaatgtgaaa 38138115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 38679933 - 38679882
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||||||||||||| ||| ||||| ||| |||||||||||||||||| ||||    
T  38679933 attaatttatcactctcttaaaaaatacactttcaaaaaatgtgaaagattt 38679882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 7667113 - 7667063
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaa 332  Q
    ||||||||| ||||||| | ||||||||| || ||||||||||||||||||    
T  7667113 taagtattagtttatcattctctaaaaaattattctttcaaaaaatgtgaa 7667063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 12863601 - 12863543
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||| |||||||||||| | ||| ||||| |  ||||||||||||||||||||||||||    
T  12863601 taagcattaatttatcattatctgaaaaattggtctttcaaaaaatgtgaaatatttct 12863543  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 40985327 - 40985289
Alignment:
Q  302 tctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  40985327 tctacaaaaatactctttcaaaaaatgtgaaatatttct 40985289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 45510480 - 45510526
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaa 333  Q
    |||||||||||| | ||||||||| |||||||||| |||||||||||    
T  45510480 attaatttatcattctctaaaaaattactctttcacaaaatgtgaaa 45510526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 3363744 - 3363797
Alignment:
Q  286 tattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttc 339  Q
    ||||||||||||||| | |||| || |||||||| ||||| |||||||||||||    
T  3363744 tattaatttatcactctttaaataaatactcttttaaaaattgtgaaatatttc 3363797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 23552333 - 23552374
Alignment:
Q  305 aaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||| |||||||||||||||||||||| |||||| |||||    
T  23552333 aaaaaaatactctttcaaaaaatgtgaaaaatttctcaattt 23552374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 31055485 - 31055550
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttca-aaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||||||| |||||||||  ||||||| | |||||||||||| |||||| |||||    
T  31055485 taagcattaatttatcactctctaaaaaaacactcttttataaaaatgtgaaagatttctcaattt 31055550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 38505287 - 38505234
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||||||| | ||||||||| |||||||| ||||||| ||||| ||||||    
T  38505287 attaatttatcattctctaaaaaactactcttttaaaaaatttgaaagatttct 38505234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 41471599 - 41471648
Alignment:
Q  305 aaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||||| |||||||||||||||||||||| || |||  ||||||||||||    
T  41471599 aaaaaaatactctttcaaaaaatgtgaaagatctctccatttccccctat 41471648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 43188990 - 43189039
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtga 331  Q
    ||||||||| ||||||| ||||||||||| |  |||||||||||||||||    
T  43188990 taagtattagtttatcattttctaaaaaactgttctttcaaaaaatgtga 43189039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 23465948 - 23465892
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||| | ||||||||| || ||||| ||||||||||||| ||||    
T  23465948 taagaattaatttatcattctctaaaaaactattcttttaaaaaatgtgaaagattt 23465892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 43230112 - 43230164
Alignment:
Q  286 tattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||||| || |||||||| |||| ||||||||||| ||||| ||||    
T  43230112 tattaatttatcatttactaaaaaaatactatttcaaaaaatatgaaagattt 43230164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 46891519 - 46891589
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccct 352  Q
    ||||||||||||||||| | ||||||||| || ||||||||||||| ||||| |||||| ||||| |||||    
T  46891519 taagtattaatttatcagtctctaaaaaaataatctttcaaaaaatatgaaagatttctcaattttcccct 46891589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 35283220 - 35283284
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||| |||||||||||||| |  |||||| |||||||||||||||||||||| |||||| |||||    
T  35283220 taagaattaatttatcactctaaaaaaaaatactctttcaaaaaatgtgaaagatttctcaattt 35283284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 36637940 - 36638004
Alignment:
Q  290 aatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    ||||||||||| |||||| || |||| ||||||||||||||||| |||||| ||||| |||||||    
T  36637940 aatttatcactctctaaataaatactttttcaaaaaatgtgaaagatttctcaattttcccctat 36638004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 1132878 - 1132827
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||||||||||| | ||||||||| |||||||||||||||||||||| ||||    
T  1132878 attaatttatcattctctaaaaaattactctttcaaaaaatgtgaaagattt 1132827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 3334002 - 3334061
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||| | ||||||||| ||||||| |||||||||||||| |||||| |||||    
T  3334002 attaatttatcattctctaaaaaaatactcttccaaaaaatgtgaaagatttctcaattt 3334061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 53620354 - 53620412
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||| |||||||||||| | ||||||||| ||||||||||||||||||| || ||||||    
T  53620354 taagaattaatttatcattctctaaaaaaatactctttcaaaaaatgtgtaagatttct 53620412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 32721030 - 32720973
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttc 339  Q
    |||| |||||||||||||| |||| |||| ||||||||||| |||||||||| |||||    
T  32721030 taagcattaatttatcactctctacaaaaatactctttcaataaatgtgaaagatttc 32720973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 32858963 - 32859018
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||||||||||| | ||||||||  |||||||||||||||||||||| ||||    
T  32858963 taagtattaatttatcattctctaaaaat-tactctttcaaaaaatgtgaaagattt 32859018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 3537344 - 3537403
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||| | ||||||||| |||||||| ||||||| ||||| ||||||| ||||    
T  3537344 attaatttatcattctctaaaaaactactcttttaaaaaatttgaaagatttcttcattt 3537403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 40674241 - 40674304
Alignment:
Q  283 aagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    ||||||| |||||||||  ||||||||| | ||||||||||||||||||||  ||||| |||||    
T  40674241 aagtattgatttatcacactctaaaaaaattctctttcaaaaaatgtgaaaggtttctcaattt 40674304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 51686644 - 51686703
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||| | ||||||||||||| |||||||||||| | ||| ||||||| ||||    
T  51686644 attaatttatcattctctaaaaaagtacactttcaaaaaatttaaaagatttcttcattt 51686703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 45005507 - 45005597
Alignment:
Q  178 gtctattttacgagaatttaagggaggttagtgtaagtttaaaaattagaggaggtgtcagtgtcattttcatagaccttaagggaggtga 268  Q
    |||||||| | ||||| ||||||||| | ||||| ||||| |||| ||| |||  ||| ||||||||||| ||| |||| |||||||||||    
T  45005507 gtctatttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtga 45005597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 45898644 - 45898606
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaa 325  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  45898644 attaatttaacactttctaaaaaattactctttcaaaaa 45898606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 48951981 - 48951923
Alignment:
Q  292 tttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttcccc 350  Q
    ||||||| ||||||||||| |||||||||||||| ||| ||| ||||||  ||||||||    
T  48951981 tttatcattttctaaaaaaatactctttcaaaaattgtaaaaaatttctccatttcccc 48951923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 37457182 - 37457215
Alignment:
Q  305 aaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||||| |||||||||||||||||||||||||||    
T  37457182 aaaaaactactctttcaaaaaatgtgaaatattt 37457215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 54089789 - 54089729
Alignment:
Q  285 gtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaattt 346  Q
    |||||||||||||||| |  |||||| |||| ||||||||||||||||| |||||| |||||    
T  54089789 gtattaatttatcactataaaaaaaa-tactatttcaaaaaatgtgaaagatttctcaattt 54089729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 4247250 - 4247306
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| |||||||||||| | ||||||||| |||||||| ||||||| ||||| ||||    
T  4247250 taagcattaatttatcattctctaaaaaattactctttaaaaaaatatgaaagattt 4247306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 15499247 - 15499191
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||| ||||||| | ||||||||  |||| ||||||||||||||||| ||||    
T  15499247 taagtattattttatcattctctaaaaatttactatttcaaaaaatgtgaaagattt 15499191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 30697509 - 30697574
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttcttaatttccccctat 354  Q
    |||| ||||||| | ||||||||| || ||||||||||||||||||  |||| | |||||||||||||    
T  30697509 attagtttatcattctctaaaaaaataatctttcaaaaaatgtgaa--atttatcaatttccccctat 30697574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 50201701 - 50201757
Alignment:
Q  282 taagtattaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    |||| ||||||||| || | ||||||||| |||||||||||||| ||||||| ||||    
T  50201701 taagcattaatttaccattctctaaaaaaatactctttcaaaaattgtgaaagattt 50201757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 547 - 496
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatattt 338  Q
    ||||||||| || | ||||||||  |||||||||||||||||||||||||||    
T  547 attaatttaacattctctaaaaatttactctttcaaaaaatgtgaaatattt 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 7209 - 7262
Alignment:
Q  287 attaatttatcactttctaaaaaagtactctttcaaaaaatgtgaaatatttct 340  Q
    |||||||||||| ||||||||||| |||||||| ||||||  ||||| ||||||    
T  7209 attaatttatcattttctaaaaaactactcttttaaaaaaattgaaaaatttct 7262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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