View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_high_21 (Length: 239)
Name: NF12850_high_21
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 43438950 - 43438786
Alignment:
| Q |
60 |
agtagaagtatgaaagaagatttgaatgcaaaaataattaattaacttgcctgtggaggaccatgttcagaggtttgatgtctatattcatgcatgatcc |
159 |
Q |
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| T |
43438950 |
agtagaagtatgaaagaagatttgaattaatgcaaaaataattaacttgcctgtggaggaccatgttcagaggtttgatgtctatattcatgcatgatcc |
43438851 |
T |
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| Q |
160 |
aatcagttttccttccatttggggcacgtcccttgtaaaagacaagtgtcttcctcattcctatt |
224 |
Q |
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| T |
43438850 |
aatcagttttccttccatttggggcacgtcccttgtaaaagacaagtgtcttcctcattcctatt |
43438786 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 32225485 - 32225601
Alignment:
| Q |
104 |
acttgcctgtggaggaccatgttcagaggtttgatgtctatattcatgcatgatccaatcagttttccttccatttggggcacgtcccttgtaaaagaca |
203 |
Q |
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| T |
32225485 |
acttgcctgtggaggtgcattttcaactgtttcaagcctatattcatgcatgatccaatcagttttctgtccattaggtgctcttcctttgtagaaaacg |
32225584 |
T |
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| Q |
204 |
agtgtcttcctcattcc |
220 |
Q |
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| T |
32225585 |
agtgtcttcctcattcc |
32225601 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 42048512 - 42048582
Alignment:
| Q |
147 |
tcatgcatgatccaatcagttttccttccatttggggcacgtcccttgtaaaagacaagtgtcttcctcat |
217 |
Q |
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| T |
42048512 |
tcatgcatgatccaatcagatttctgtccatttggggcacgtcctttgtaaaacactagagtctttctcat |
42048582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 8450279 - 8450203
Alignment:
| Q |
141 |
ctatattcatgcatgatccaatcagttttccttccatttggggcacgtcccttgtaaaagacaagtgtcttcctcat |
217 |
Q |
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| T |
8450279 |
ctatattcatgcatgatccaatcagatttctgtccattaggggctcttcctttgtagaaaacaagggtcttcctcat |
8450203 |
T |
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