View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12850_high_26 (Length: 220)

Name: NF12850_high_26
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12850_high_26
NF12850_high_26
[»] chr5 (2 HSPs)
chr5 (10-209)||(17220575-17220774)
chr5 (10-206)||(43451990-43452185)
[»] chr4 (1 HSPs)
chr4 (18-192)||(902588-902762)
[»] chr2 (3 HSPs)
chr2 (10-104)||(32208789-32208883)
chr2 (10-104)||(25966650-25966744)
chr2 (10-104)||(32463065-32463159)
[»] chr8 (1 HSPs)
chr8 (10-178)||(37340994-37341162)
[»] chr7 (2 HSPs)
chr7 (22-201)||(28245491-28245669)
chr7 (10-90)||(20215238-20215318)
[»] chr6 (1 HSPs)
chr6 (29-104)||(30145977-30146052)
[»] chr3 (1 HSPs)
chr3 (66-104)||(27990563-27990601)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 17220575 - 17220774
Alignment:
Q  10 tggacatcacaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctcaacaat 109  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  17220575 tggacataacaacatacatatggtctctgatacggcccaaccttccgcccaactctaagaacccatgctctccatcctcctgagcagcaatctcatcaat 17220674  T
Q  110 gatctcttgctttgttggcttcgacaccggaagttcaatgtctagaagaatcatgcgtggatgaaagacgtcataaaatcattggatgtatctctctgct 209  Q
    ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17220675 gatctcttgctctggtggcttcggcaccggaagttcaatgtctagaagaatcatgcgtggatgaaagacgtcataaaaccattggatgtatctctctgct 17220774  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 43451990 - 43452185
Alignment:
Q  10 tggacatcacaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctcaacaat 109  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||   ||| ||||||| ||||||||| | ||||||||| | || |||||||| ||||    
T  43451990 tggacataacaacatacacatggtctctgatacggcccaaccttccccccagctctaagtacccatgcttttcatcctcctcaacagcaatctcatcaat 43452089  T
Q  110 gatctcttgctttgttggcttcgacaccggaa-gttcaatgtctagaagaatcatgcgtggatgaaagacgtcataaaatcattggatgtatctctct 206  Q
    |  |||  ||| || |||| ||  ||||||||  |||  ||| | |||||||||||||||||||| |||| | |||||| ||||  ||||||| ||||    
T  43452090 ggcctcccgctctggtggcctcagcaccggaaccttc--tgtttggaagaatcatgcgtggatgagagacttgataaaaccatttaatgtatccctct 43452185  T

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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 902762 - 902588
Alignment:
Q  18 acaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctcaacaatgatctctt 117  Q
    |||||||||| ||| ||||  ||||| |||||||||| | | |||||| |||||||||||||||||||||||||||||  ||||||| |||||| |||      
T  902762 acaacatacacatgatctcttatacgacccaaccttccgcctaactcttagaacccatgctctccatcctcctgagcagaaatctcatcaatgacctccc 902663  T
Q  118 gctttgttggcttcgacaccggaagttcaatgtctagaagaatcatgcgtggatgaaagacgtcataaaatcatt 192  Q
    ||| || |||| ||||||||||||  |||   | | ||||||||||| |||||||||||||||||||||| ||||    
T  902662 gctctggtggcctcgacaccggaacctcatgatttggaagaatcatgtgtggatgaaagacgtcataaaaccatt 902588  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 32208883 - 32208789
Alignment:
Q  10 tggacatcacaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctca 104  Q
    ||||||| |||||||| |||||||||| |||||||||||||||||   |||||||| |||||||||||||||||||||||| | |||||||||||    
T  32208883 tggacataacaacatatatatggtctctgatacggcccaaccttccacccaactcttagaacccatgctctccatcctccttaacaacaatctca 32208789  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 25966744 - 25966650
Alignment:
Q  10 tggacatcacaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctca 104  Q
    |||||||||||||||||| |||||||| |||||||| |||||||  |  ||| || ||| |||| || ||||||||||||| |||| ||||||||    
T  25966744 tggacatcacaacatacacatggtctctgatacggctcaacctttcgaacaaatccaagtacccctgatctccatcctcctcagcagcaatctca 25966650  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 32463065 - 32463159
Alignment:
Q  10 tggacatcacaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctca 104  Q
    ||||||||||| |||| | |||||||| ||||||||||||||||| | |||  || ||| |||| |||| || |||||||| || | ||||||||    
T  32463065 tggacatcacaccatagacatggtctctgatacggcccaaccttccggccagatccaagtacccctgctttctatcctcctcagaagcaatctca 32463159  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 37341162 - 37340994
Alignment:
Q  10 tggacatcacaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctcaacaat 109  Q
    ||||||| |||| ||| | ||| |||| |||||  ||| |||||| | | ||||||||||||||||||||||||||||||| ||||| ||||||| |||     
T  37341162 tggacataacaaaatatacatgatctctgatacaaccctaccttccgccgaactctaagaacccatgctctccatcctcctcagcaataatctcatcaag 37341063  T
Q  110 gatctcttgctttgttggcttcgacaccggaagttcaatgtctagaagaatcatgcgtggatgaaagac 178  Q
    |  ||| |||| || |||| |||||||| |||  ||   || | |||||| ||||||||||||| ||||    
T  37341062 ggcctcctgctctggtggcctcgacacctgaacctcttggtttggaagaaacatgcgtggatgagagac 37340994  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 28245669 - 28245491
Alignment:
Q  22 catacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctcaacaatgatctcttgctt 121  Q
    |||||| |||||||| |||||| || ||||||| | |||  ||||||||  |||||||| |||| || |||||| |||||||| |||||| |||  |||     
T  28245669 catacacatggtctctgatacgacc-aaccttccgcccagttctaagaattcatgctcttcatcatcttgagcagcaatctcatcaatgacctcccgctc 28245571  T
Q  122 tgttggcttcgacaccggaagttcaatgtctagaagaatcatgcgtggatgaaagacgtcataaaatcattggatgtatc 201  Q
    || |||| ||| ||||| ||  |||  || ||||||||||||| |||||||| ||| ||||||||| || || |||||||    
T  28245570 tggtggcctcggcaccgaaacctcatagtttagaagaatcatgtgtggatgagagatgtcataaaaccactgaatgtatc 28245491  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 20215238 - 20215318
Alignment:
Q  10 tggacatcacaacatacatatggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcct 90  Q
    ||||||||||| |||||| |||||||  ||| | ||||||||||  |  || ||||||| ||||||| |||||||||||||    
T  20215238 tggacatcacaccatacacatggtctatgatgcagcccaaccttacgctcagctctaagtacccatggtctccatcctcct 20215318  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 30146052 - 30145977
Alignment:
Q  29 atggtctccgatacggcccaaccttctgtccaactctaagaacccatgctctccatcctcctgagcaacaatctca 104  Q
    |||||||  ||||||||||||||||| | | | |||||||||| |||||||||||||||||| |||| ||||||||    
T  30146052 atggtctttgatacggcccaaccttccgcctagctctaagaacacatgctctccatcctcctcagcagcaatctca 30145977  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 27990563 - 27990601
Alignment:
Q  66 aagaacccatgctctccatcctcctgagcaacaatctca 104  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  27990563 aagaacccatgctctccatcctcctcaacaacaatctca 27990601  T

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