View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_high_27 (Length: 212)
Name: NF12850_high_27
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 27688844 - 27689018
Alignment:
| Q |
21 |
tctgtgtcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaa |
120 |
Q |
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| T |
27688844 |
tctgtgtcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaa |
27688943 |
T |
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| Q |
121 |
acacatgtaaacaactgagttgatattttttgtgtcaagccactttagacactcgtgtttgtcaatagatgcttc |
195 |
Q |
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| T |
27688944 |
acacatgtaaacaactgagttgatattttttgtgtcaagccactttagacactcgtgtttgtcaatagatgcttc |
27689018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 18989392 - 18989268
Alignment:
| Q |
56 |
gatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatgtaaacaactgagttgatattttttgtgt |
155 |
Q |
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| T |
18989392 |
gatgctttgagtcccatagaaatttctttaagctgagagttaaggaagtgatttgtacttccaaagcacacataaacaactaagttgatatcttttgtgt |
18989293 |
T |
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| Q |
156 |
caagccactttagacactcgtgttt |
180 |
Q |
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| T |
18989292 |
caagccactttagacacttgtgttt |
18989268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 19001850 - 19001702
Alignment:
| Q |
30 |
tcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatgta |
129 |
Q |
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| T |
19001850 |
tcaccacccaaacaaaatctttccccgatgctttgagtcccatatcaatttctttaatctgagagttaaggaagtgatttgtacttccaaagaacacata |
19001751 |
T |
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| Q |
130 |
aacaactgagttgatattttttgtgtcaagccactttagacactcgtgttt |
180 |
Q |
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| T |
19001750 |
aacaactgagttgata--tcttgtgtcaagccactttagacactcatgttt |
19001702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 33391086 - 33391236
Alignment:
| Q |
30 |
tcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatgta |
129 |
Q |
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| T |
33391086 |
tcaccacccaaacaaaatctttccccgatgcttcgagtcccatagcaatttctttaagctgagagttaaggaagtgatttttacttccaaagcacacata |
33391185 |
T |
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| Q |
130 |
aacaactgagttgatattttttgtgtcaagccactttagacactcgtgttt |
180 |
Q |
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| T |
33391186 |
aacaattgagttgatatcttttgtgtcaagccactttagacactcatgttt |
33391236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 33382971 - 33382860
Alignment:
| Q |
27 |
tcctcacaacccaaataaaattatgccctgatgcttcgagtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacat |
126 |
Q |
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||||||| |||||||||||| ||||| |||||||| |||||| |||||||||| |||||||||||||| | ||| | | |||||||||||| || || |
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| T |
33382971 |
tcctcaccacccaaataaaaaattgcccggatgcttcaagtcccgtagcaatttctttaagctgagagtttaagaaattcgccatacttccaaagcatat |
33382872 |
T |
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| Q |
127 |
gtaaacaactga |
138 |
Q |
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| T |
33382871 |
ataaacaactga |
33382860 |
T |
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