View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_high_4 (Length: 477)
Name: NF12850_high_4
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 38342127 - 38342571
Alignment:
| Q |
18 |
atttacacatgtcagggtagtgcttattttgaggtagaagaaaagataaagcttcgagttggttgagagagcagctgagaattataatttctttggcgga |
117 |
Q |
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| T |
38342127 |
atttacacatgtcagggtagtgcttattttgaggtagaagaaaagataaagcttcgagttggttgagagagcagctgagaattataatttctttggcgga |
38342226 |
T |
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| Q |
118 |
tagcagctggaacaaagctgagctataatctagagttggtgctttgggcgtgaatgcatgctgatgttgtggcgtggcatatattctagtaggatgttgg |
217 |
Q |
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| T |
38342227 |
tagcagctggaacaaagctgagctataatctagagttggtgctttgggcgtgaatgcgtgctgatgttgtggcgtggcatatattctagtaggatgttgg |
38342326 |
T |
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| Q |
218 |
agattatctgggcacaaaattggagaataattctgcatattgttttgatagagcccagtcacggagactgtgttgggataccaagaaaatggttgtggta |
317 |
Q |
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| T |
38342327 |
agattatttgggcacaaaattggagaataattctgcatattgttttgatagagcccagtcacagagactgtgttgggataccaagaaaatggttgtggta |
38342426 |
T |
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| Q |
318 |
aataggtccaggtatgtaatgaattcaattgtctgtgatggcttgaatatatttaatacaacaagttgtgtcattgtgattattcataagatgcatctat |
417 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342427 |
aataggtctgggtatgtaatgaattcaattgtctgtgatggcttgaatatatttaatacaacaagttgtgtcattgtgattattcataagatgcatctat |
38342526 |
T |
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| Q |
418 |
gtggatacaattctttgattgagaaagaagtgagcatacttggtt |
462 |
Q |
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| T |
38342527 |
gtggatacaattctttgattgagaaagaagtgagcatacttggtt |
38342571 |
T |
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