View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12850_high_9 (Length: 415)
Name: NF12850_high_9
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 13231716 - 13231328
Alignment:
| Q |
9 |
agcataggaaaaagcctatcttcttgcataatataagcagaagttcttttaatcaagcttgcattcacactaattccatccaatgaaacttttcctttaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13231716 |
agcataggaaaaagcctatcttcttgcataatataagcagaagttcttttaatcaagcttgcattcacactatttccatccaatgaaacttttcctttaa |
13231617 |
T |
|
| Q |
109 |
gactcccacttgcaattctcccagcaagtccatccaataaagttgattttccagcaccacttggtcccattactgcagtgatacaaccctttggtgcata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13231616 |
gactcccacttgcaattctcccagcaagtccatccaataaagttgattttccagcaccacttggtcccattactgcagtgatacaaccctttggtgcata |
13231517 |
T |
|
| Q |
209 |
acctgttatatcatgcaacaaatcaacatcttcatttgaccattttccatcaactttcttcttctttgtcactgtgtatgtaagagattcaaattcaagt |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13231516 |
acctgttatatcatgcaacaaatccacatcttcattcgaccattttccatcaactttcttcttctttgtcactgtgtatgtaagagattcaaattcaagt |
13231417 |
T |
|
| Q |
309 |
cctccagtgaaactaacaggtttatgctttatgtcaatcactgtttcaagttcaagaccttgtgttttcattttcttgaggtgcaagtt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13231416 |
cctccagtgaaactaacaggtttatgctttatgtcaatcactgtttcaagttcaagaccttgtgttttcattttcttgaggtgcaagtt |
13231328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University