View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_10 (Length: 439)
Name: NF12850_low_10
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 43933528 - 43933823
Alignment:
| Q |
20 |
cagaggaggttagatactttgaccatgacacagctctcttgtattcacctagtgaaagtcttctccctgacctcacattgttagaaatttcttttaacca |
119 |
Q |
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| T |
43933528 |
cagaggaagttagatactttgaccatgacacagctctcttgtattcacctagtgaaagtcttctcccagacctcacattgttagaaatttcttttaacca |
43933627 |
T |
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| Q |
120 |
atgcaaattcttcttcatgcttcaaatttaactcttataagattttaaaccaaatttccaaaactagactaattttttaaacaaaaatgcatcatttgca |
219 |
Q |
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| T |
43933628 |
atgcaaattcttcttcatgcttcaaatttaactcttataagattttaaaccaaatttccaaaactagactaattttttaaacaaaaatgcatcatttgca |
43933727 |
T |
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| Q |
220 |
tggtatataaccagttagaaaagaagaaaccaactgcaaatggaaaccatttcattctcttattgtgtgtgtaataagataagagtgtaaacaaga |
315 |
Q |
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| T |
43933728 |
tggtatataaccagttagaaaagaagaaaccaactgcaaatggaaaccatttcattctcttattgtgtgtgtaataagataagagtgtaaacaaga |
43933823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 43933860 - 43933940
Alignment:
| Q |
347 |
gtagttgttttcattaggaaagcacataacataagtaatgaaattgagaaaggtcttaattaattattgttaagcagtgaa |
427 |
Q |
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| T |
43933860 |
gtagttgttttcattaggaaagcacataacataagtaatgaaattgagaaaggtcttaattaattattgttaagcagtgaa |
43933940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 35133120 - 35133219
Alignment:
| Q |
33 |
atactttgaccatgacacagctctcttgtattcacctagtgaaagtcttctccctgacctcacattgttagaaatttcttttaaccaatgcaaattcttc |
132 |
Q |
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| T |
35133120 |
atactttgaccaagacactgctcttttgtactcaccaagtgaaagtctcctcccagactttccactgttagaaatttgtttataccagttcaaattcttc |
35133219 |
T |
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