View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_12 (Length: 414)
Name: NF12850_low_12
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 38587130 - 38587510
Alignment:
| Q |
20 |
ggcttgccacaactcggtgccgactctttccatgcgcaaccatagaaacattgctccttcccctatttgttctcgatgtggcctccacgatgaaactttc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38587130 |
ggcttgccacaactcggtgccgactctttccatgctcaaccatagaaacattgctccttcccctgtttgttctcgatgtggcctccacgatgaaactttc |
38587229 |
T |
|
| Q |
120 |
ctccattgtgtgcgggattgtgctcattctaaaagtatttggcatcggattggttttattcataatgatttcttctctacttctgtcactcatgagtggc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38587230 |
ctccattgtgtgcgggattgtgctcattctaaaagtatttggcagcggattggttttattcataatgatttcttctctacttctgtcactcatgagtggc |
38587329 |
T |
|
| Q |
220 |
ttaagaacaactcagtgggtcatctttccttcactcttgcaacaactatttggtgggcatggaggaatagaaacatgatgtgtctcgaaaataaaaattg |
319 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
38587330 |
ttaagaacaactcagtgggtcatctttccttcacttttgcagcaactatttggtgggcatggaggaatagaaacatgatgtgtcttgaaaatgaaaattg |
38587429 |
T |
|
| Q |
320 |
gactctcaattatatatttcttacaacattcaaggtatggttgatactctaaaaatatcattcccttcttctcgtaacagtga |
402 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38587430 |
gactctcaat--tatatttcttacaacattcaaggtatggttgatactctaaaaatatcattcccttcttctcgtaacagtga |
38587510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 33860466 - 33860139
Alignment:
| Q |
20 |
ggcttgccacaactcggtgccgactctttccatgcgcaaccatagaaacattgctccttcccctatttgttctcgatgtggcctccacgatgaaactttc |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
33860466 |
ggcttgccacaactcggtgccgactctttccatgctcaaccataaaaacattgctccttcccctatttgttctcgatgtgacctccatgatgaaactttc |
33860367 |
T |
|
| Q |
120 |
ctccattgtgtgcgggattgtgctcattctaaaagtatttggcatcggattggttttattcataatgatttcttctctacttctgtcactcatgagtggc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33860366 |
ctccattgtgtgcgggattgtgctcattctaaaattatttggcagcggattggttttattcataatgatttcttctctacttctatcactcatgagtggc |
33860267 |
T |
|
| Q |
220 |
ttaagaacaactcagtgggtcatctttccttcactcttgcaacaactatttggtgggcatggaggaatagaaacatgatgtgtctcgaaaataaaaattg |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
33860266 |
ttaagaacaacttggtgggtcatctttccttcacttttgcagcaaccatttggcgggcatggaggaatagaaacatgatgtatctcggaaatgaaaattg |
33860167 |
T |
|
| Q |
320 |
gactctcaattatatatttcttacaacatt |
349 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
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|
| T |
33860166 |
gactctcaatt--atatttcttacaacatt |
33860139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 363
Target Start/End: Original strand, 18400684 - 18401018
Alignment:
| Q |
27 |
cacaactcggtgccgactctttccatgcgcaaccatagaaacattgctccttcccctatttgttctcgatgtggcctccacgatgaaactttcctccatt |
126 |
Q |
| |
|
|||||||||||||| || | ||||||| ||||||||||||||||||||||||||| |||||||||| | |||| ||| ||||||||||||||||||| |
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| T |
18400684 |
cacaactcggtgcctaccttatccatgctcaaccatagaaacattgctccttccccagtttgttctcggcgaggccaccatgatgaaactttcctccatt |
18400783 |
T |
|
| Q |
127 |
gtgtgcgggattgtgctcattctaaaagtatttggcatcggattggttttattcataatgatttcttctctacttctgtcactcatgagtggcttaagaa |
226 |
Q |
| |
|
||||| |||||| ||||||| || || ||||| || | ||||||| ||| |||||| ||| | | |||||| |||||| | |||||||||| |
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|
| T |
18400784 |
gtgtgaaagattgtaaccattctagaatcatgtggcaacgcctcggttttaatcagcctgattttttcacaaattctgtaactcataattggcttaagac |
18400883 |
T |
|
| Q |
227 |
caactcagtgggtcatctttccttcactcttgcaacaactatttggtgggcatggaggaatagaaacatgatgtgtctcgaaaataaaaattggactctc |
326 |
Q |
| |
|
||| | ||||| | ||| | |||| | ||||| | || ||||||||||| |||||||||||||||||||||||| | | || ||||||||||| | |
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|
| T |
18400884 |
caattttgtgggccctctgacgttcatttttgcagctacaatttggtgggcgtggaggaatagaaacatgatgtgtttaggcaacgaaaattggactata |
18400983 |
T |
|
| Q |
327 |
aattatatatttcttacaacattcaaggtatggttga |
363 |
Q |
| |
|
||| || |||| | ||||||||||||||||||||| |
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|
| T |
18400984 |
aat--catctttcctccaacattcaaggtatggttga |
18401018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 50823371 - 50823325
Alignment:
| Q |
256 |
ttgcaacaactatttggtgggcatggaggaatagaaacatgatgtgt |
302 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | |||||||||||| |
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|
| T |
50823371 |
ttgcagcaactatttggtggacatggaggaatcgtaacatgatgtgt |
50823325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 47731402 - 47731447
Alignment:
| Q |
256 |
ttgcaacaactatttggtgggcatggaggaatagaaacatgatgtg |
301 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
47731402 |
ttgcagcaacaatttggtgggcatggaggaatcgaaacttgatgtg |
47731447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 11052529 - 11052484
Alignment:
| Q |
256 |
ttgcaacaactatttggtgggcatggaggaatagaaacatgatgtg |
301 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
11052529 |
ttgcagcaacaatttggtgggcatggaggaatcgaaacatgatgtg |
11052484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 28281225 - 28281161
Alignment:
| Q |
66 |
aacattgctccttcccctatttgttctcgatgtggcctccacgatgaaactttcctccattgtgt |
130 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||||||||| || |||||||| ||||||||||| |
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|
| T |
28281225 |
aacattgctccttctactatttgtacacgttgtggcctccatgaagaaacttttctccattgtgt |
28281161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 43709273 - 43709228
Alignment:
| Q |
256 |
ttgcaacaactatttggtgggcatggaggaatagaaacatgatgtg |
301 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
43709273 |
ttgcagcaacaatttggtgggcatggaggaatcgaaacatgatgtg |
43709228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 28481573 - 28481539
Alignment:
| Q |
268 |
tttggtgggcatggaggaatagaaacatgatgtgt |
302 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
28481573 |
tttggtgggcgtggaggaatagaaacatgatgtgt |
28481539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 27154637 - 27154742
Alignment:
| Q |
58 |
accatagaaacattgctccttcccctatttgttctcgatgtggcctccacgatgaaactttcctccattgtgtgcgggattgtgctcattctaaaagtat |
157 |
Q |
| |
|
|||||||||||| ||||| |||| |||| ||||| ||||| ||| ||||||||||| ||||||||||| ||||||||| ||| |||| | |||| |
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|
| T |
27154637 |
accatagaaacaatgctcactcccaagtttgctctcggtgtggtctctctgatgaaacttttctccattgtgtccgggattgtaatcactctagacgtat |
27154736 |
T |
|
| Q |
158 |
ttggca |
163 |
Q |
| |
|
|||||| |
|
|
| T |
27154737 |
ttggca |
27154742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 24180645 - 24180613
Alignment:
| Q |
108 |
gatgaaactttcctccattgtgtgcgggattgt |
140 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
24180645 |
gatgaaacttttctccattgtgtgcgggattgt |
24180613 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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