View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_13 (Length: 412)
Name: NF12850_low_13
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 4247469 - 4247868
Alignment:
| Q |
1 |
ccagtttttggtcgagcatctgtgtttcgctcgctctttcaatgatttgatgccatattccttggatgttttcattcatacctatttttccttttcagtc |
100 |
Q |
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| T |
4247469 |
ccagtttttggtcgagcatctgtgtttcgc----tctttcaatgatttgatgccatattccttggatgttttcattcatacctatttttccttttcagtc |
4247564 |
T |
|
| Q |
101 |
cttatatccattcggaggcgtcagtttcagcaagtaaaagaaaccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaagaac |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247565 |
cttatatccatccggaggcgtcagtttcagcaagtaaaagaaaccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaagaac |
4247664 |
T |
|
| Q |
201 |
tcgataatgtctttgaccgagctgttgagattgcaaattctatatatgaagtttgcgataagttggtggtctgtctattataaaacatttcatcttttcc |
300 |
Q |
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| T |
4247665 |
tcgataatgtctttgaccgagctgttgagattgcaaattctatatatgaagtttgcgataagttggtggtctgtctattataaaacatttcatcttttca |
4247764 |
T |
|
| Q |
301 |
tttgttgggagaacataaattattgttatattttcaattttttgccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4247765 |
tttgttgggagaacataaattattgttatattttcaattttttgccgacattttttcacttaacaggatgaggatgctgcaagggagaagttccgatctc |
4247864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 36 - 362
Target Start/End: Complemental strand, 2402573 - 2402245
Alignment:
| Q |
36 |
ctttcaatgatttgatgccatattccttggatgttttcattcatacctatttttcc-ttttcagtccttatatccattcggaggcgtcagtttcagcaag |
134 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||| ||||||||||||| | |||||||||||||| || | | || |||||||||| |||||| |
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| T |
2402573 |
ctttcaatgagttgacgccacattccttggatgttttcatacatacctattttttcattttcagtccttatctctacccagatgcgtcagtttgagcaag |
2402474 |
T |
|
| Q |
135 |
taaaagaaaccattcctataattcttaatgtattgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgc |
234 |
Q |
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||| || | ||||| ||||||||| |||||||| |||| |||| || |||| ||| | | ||| ||||||||||| || ||||||||||| | |
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| T |
2402473 |
taagagcagttgttccttcgattcttaattcattgaaggttgtacatttggagacagataaagcaattgatgatgtctttgacagaactgttgagatttc |
2402374 |
T |
|
| Q |
235 |
aaattctatatatgaagtttgcgataagttggtggtctgtctattataaaacatttcatcttttcctttgttgggagaacataaattattgttatatttt |
334 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||| |||| || ||||||||||||||||| | ||||| |
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| T |
2402373 |
aaattctatatatgaagtttgcagtaagttggtggtcttcctattttaaaacatttcatccttttcttttttatgagaacataaattattgattgatttt |
2402274 |
T |
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| Q |
335 |
caa-ttttttgccgacattttttcactta |
362 |
Q |
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||| |||||||| |||||||||||||||| |
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| T |
2402273 |
caacttttttgctgacattttttcactta |
2402245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 2798447 - 2798523
Alignment:
| Q |
328 |
atattttcaattttttgccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctctgct |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798447 |
atattttcaattttttgccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctctgct |
2798523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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