View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_14 (Length: 411)
Name: NF12850_low_14
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 39073815 - 39073439
Alignment:
| Q |
17 |
cactgtggcagctgttgtggaagtgagtagtaaatttggtgcaaaaggccagacgtcacaaccggaagaaggggacaataacaaagcactaggagttgta |
116 |
Q |
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| T |
39073815 |
cactgtggcagctgttgtggaagtgagtagtaaatttggtgcaaaaggccaaacgtcacaaccggaagaaggggacaataacaaagcactaggagttgta |
39073716 |
T |
|
| Q |
117 |
gaattaatgcattgtgatgaaagtggcaattgaatgtgttgttgttgttgattttgaggagtggattgaagcaacttgatttgtctcttcaaaaacttaa |
216 |
Q |
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| T |
39073715 |
gaattaatgcattgtgatgaaagtggcaattgaatgtgttgttgttgttgattttgaggagtggattgaagcaacttgatttgtctcttcaaaaacttaa |
39073616 |
T |
|
| Q |
217 |
cataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073615 |
cataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgattctttctct |
39073516 |
T |
|
| Q |
317 |
tctatgtctagctgcaacactttgtggatcttcgctgattcgaacgtttcttcgttttggttttcgaatcgttgctg |
393 |
Q |
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| T |
39073515 |
tctatgtctagctgcaacactttgtggatcttcgctgattcgaacgtttcttcgttttggttttcgaatcgttgctg |
39073439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 346
Target Start/End: Complemental strand, 6259729 - 6259580
Alignment:
| Q |
197 |
ttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatc |
296 |
Q |
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| T |
6259729 |
ttgtttcttcaaaaacttcacataatgtattgcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatctttgtaatatccttatt |
6259630 |
T |
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| Q |
297 |
ttctcactgattctttctcttctatgtctagctgcaacactttgtggatc |
346 |
Q |
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| T |
6259629 |
ctttcactaattctttctcttctatgtcttgctgctacactttgtggatc |
6259580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 348
Target Start/End: Complemental strand, 46899443 - 46899304
Alignment:
| Q |
209 |
aaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgatt |
308 |
Q |
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||||||||||||| |||| |||||||| | ||| || || |||||||||||||||||||| || || | |||||| || || | || ||||| || ||| |
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| T |
46899443 |
aaacttaacataatgaatagcttcatccaacattgatgcagtatccattttagttccacctggtaccattctttgcagtattcttattttctcgcttatt |
46899344 |
T |
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| Q |
309 |
ctttctcttctatgtctagctgcaacactttgtggatctt |
348 |
Q |
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| T |
46899343 |
ctttctcttctgtgtctagctgctatactctgaggatctt |
46899304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 25645275 - 25645321
Alignment:
| Q |
300 |
tcactgattctttctcttctatgtctagctgcaacactttgtggatc |
346 |
Q |
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||||||||||| | |||||| | |||||||||||||||||||||||| |
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| T |
25645275 |
tcactgattctatgtcttctttctctagctgcaacactttgtggatc |
25645321 |
T |
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