View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_15 (Length: 395)
Name: NF12850_low_15
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 4286440 - 4286173
Alignment:
| Q |
1 |
taacttatgtatttgcttgcagataagacctctatcgaacttgtagaagatggtactgttatgcccagtgaaaattgaacagacctctacttttatgtga |
100 |
Q |
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| T |
4286440 |
taacttatgtatttgcttgcagatgagacctctatcgaactagtagaacatggtactgttatgcccggtgaaaattgaacagacctctacgtttatgtga |
4286341 |
T |
|
| Q |
101 |
nnnnnnnnngctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaat |
200 |
Q |
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| T |
4286340 |
ttcttttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaat |
4286241 |
T |
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| Q |
201 |
atacccagattgatttttatcaaaaaacttgaatgctctatggaggtgtatattattctcagacgaat |
268 |
Q |
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| T |
4286240 |
ataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgtatatcattctcagatgaat |
4286173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 4284670 - 4284576
Alignment:
| Q |
280 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
379 |
Q |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
187 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
249 |
Q |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
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