View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_17 (Length: 372)
Name: NF12850_low_17
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 7243591 - 7243861
Alignment:
| Q |
18 |
actcttagctttgttgcttgcttcttcgatcaacaacacactctcaacaactggttttcgtttgtacgtttcctctcatctgactgcaaattgcaatggc |
117 |
Q |
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| T |
7243591 |
actcttagctttgttggttgcttcttcgatcaacaacacactctcaagaactggttttcgtttgtacgtttcctctcttctgactgcaaattgcaatggc |
7243690 |
T |
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| Q |
118 |
ttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcga |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7243691 |
ttttttcattgacaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacactattgaggatatgtgtaatcga |
7243790 |
T |
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| Q |
218 |
ttccattatcaaggttagtcactttgttaattgcactttattcaattctgaagtttctatatatgttctta |
288 |
Q |
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| T |
7243791 |
ttccattatcaaggttagtcactttgttaattgcaccttattcaattctgaagattctatatatgttctta |
7243861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 7324758 - 7324507
Alignment:
| Q |
18 |
actcttagctttgttgcttgcttcttcgatcaacaacacactctcaacaactggttttcgtttgtacgtttcctctcatctgactgcaaattgcaatggc |
117 |
Q |
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| T |
7324758 |
actcataggtttgttggttgcttcttcgatcaacaacacactctcaacaactgtttttcgtttgt--gtttccagtcttcttttcataaatcgtaatggc |
7324661 |
T |
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| Q |
118 |
ttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcga |
217 |
Q |
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| T |
7324660 |
ccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcga |
7324561 |
T |
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| Q |
218 |
ttccattatcaaggttagtcactttgttaattgcactttattcaattctgaagt |
271 |
Q |
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| T |
7324560 |
tatcattatcaaggttagttactcagttaattgcaccttattcaattctaaagt |
7324507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 100 - 277
Target Start/End: Complemental strand, 7317896 - 7317719
Alignment:
| Q |
100 |
actgcaaattgcaatggcttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactatt |
199 |
Q |
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| T |
7317896 |
actgaaaattgtaatggcggttttcactgacaacccatcattcccagccggtctcaaggttattgcaattgatcatgacatcactttcctcaactctatt |
7317797 |
T |
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| Q |
200 |
gaggatatgtgtaatcgattccattatcaaggttagtcactttgttaattgcactttattcaattctgaagtttctat |
277 |
Q |
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| T |
7317796 |
gaggagatgtgtaatcgatatcattaccaaggtttgttacttagttaattgcacattattcaattctaaagtttctat |
7317719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 8161909 - 8162039
Alignment:
| Q |
105 |
aaattgcaatggcttttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgagga |
204 |
Q |
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||||||||||| | ||||||||| ||| ||||||||||| | |||||| |||| |||| ||||||||||||||| || | ||||| | || ||||| |
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| T |
8161909 |
aaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctctaggtccttgcaattgatcatgacatcactctccttaattccatcgagga |
8162008 |
T |
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| Q |
205 |
tatgtgtaatcgattccattatcaaggttag |
235 |
Q |
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| T |
8162009 |
gatgtgtaatcgatgcaattatcaaggttag |
8162039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 7218225 - 7218326
Alignment:
| Q |
135 |
catcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgattccattatcaaggtta |
234 |
Q |
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|||||||||| | |||||||||||| |||| ||||||||||||||| || | || || | || ||||| ||||||||||||| | ||||| | ||||| |
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| T |
7218225 |
catcattcccagaaggtctcaaggttcttgcaattgatcatgacatcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggtta |
7218324 |
T |
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| Q |
235 |
gt |
236 |
Q |
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|| |
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| T |
7218325 |
gt |
7218326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 22766677 - 22766536
Alignment:
| Q |
120 |
ttttcattggcaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcgctgttcttaacactattgaggatatgtgtaatcgatt |
219 |
Q |
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||||||| | ||||||||||||||||| ||||||||| |||||||| ||||||||||||| | || | |||||||| |||||||| ||||||||||||| |
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| T |
22766677 |
ttttcatcgacaacccatcattccctgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgtgtaatcgatg |
22766578 |
T |
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| Q |
220 |
ccattatcaaggttagtcactttgttaattgcactttattca |
261 |
Q |
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|||||||||||||||| |||| || |||| ||| ||||||| |
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| T |
22766577 |
tcattatcaaggttagttacttggtaaattacaccttattca |
22766536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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