View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_2 (Length: 644)
Name: NF12850_low_2
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 626
Target Start/End: Complemental strand, 37544884 - 37544284
Alignment:
| Q |
20 |
tgaacattgacgcaagcctcttttatgcttttgattcctcaactccaaattatctcatcctttgttatgtcttgtgacgtgggatatacctcccccaact |
119 |
Q |
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| T |
37544884 |
tgaacattgacgaaagcctcttttatgcttttgattcctcaactccaaattatctcatcctttgttatatcttgtgacgtgggatatacctcccccaact |
37544785 |
T |
|
| Q |
120 |
atatgttggtctccatttcttcatcgtcgcaagtccataacactatgtagcttctaccaagcatcatctaatcatataaacctaatcagataaacttgtc |
219 |
Q |
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| T |
37544784 |
atatgttggtctccatttctttatcgtagcaagtccaaaacactatgtagcttctaccaaacattatctaatcagataaacctaatcagataaacttgtt |
37544685 |
T |
|
| Q |
220 |
agaatttaccgaaaagactttgacacctataaagttatctggttaaagaagcaaattgacatacaaagactcatttcgatgcaagatcgac-nnnnnnna |
318 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| |||| | |
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| T |
37544684 |
agaatttaccgaaaagactttgatacctataaagttttctggttagagatgcaaattgacatacaaagattcatttcgatgcaagaccgacttttttcta |
37544585 |
T |
|
| Q |
319 |
aaaatcatgagtagctcactctaaagttcactaaaaaacctagaataacttggtaaaaagtcttgataaaacnnnnnnnnnnnnnnnnnctatatgatca |
418 |
Q |
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||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
37544584 |
aaaatcatgagtaattcacactaaagttcactaaaaaacctataataacttagtaaaaagtcttgataaaacaaaaaaaaaat-------tatatgatca |
37544492 |
T |
|
| Q |
419 |
tgacatgtaatacgattttcaacatcatcacactaatttaaccaattagcaagtgaatgcatgatatgacaggttcctctcccctctacccattatactc |
518 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37544491 |
tgaaatgtaatacgattttcaacatcatcacactaatttaaccaattagcaagtgagtgcatgatatgacaggttcctctcccctctacccattatactc |
37544392 |
T |
|
| Q |
519 |
aagaatcatgaaaaccactgcttgttattcaaaatctctaatttaaaaccgaatcacactcatgcataggaggggatttggatgaagaacccacctcaag |
618 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37544391 |
aagaatcatgaaaaccactgtttgttattcaaaatctctaatttaaaaccaaatcacactcatgcataggaggggatttggatgaagaacccacctcaag |
37544292 |
T |
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| Q |
619 |
tatagatt |
626 |
Q |
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|||||||| |
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| T |
37544291 |
tatagatt |
37544284 |
T |
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