View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_20 (Length: 345)
Name: NF12850_low_20
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 28225064 - 28224755
Alignment:
| Q |
18 |
gttggttgatggttggttagaaaattatctgtttctatgaataaactgcagaaatgttagttcaatttaacaaactgtatatgaagttaccaaaag--tt |
115 |
Q |
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| T |
28225064 |
gttggttgatggttggttagaaaattatctgtttctatgaataaactgcagaaatgttagttcaatttaacaaactgtatatgaagttacgaaaagtttt |
28224965 |
T |
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| Q |
116 |
ttaatcttaaatttatggtgaaatgttatccttttattgactttcctctcactttcctctcactttcctcttctgtcaaaatc-tttgannnnnnnngtt |
214 |
Q |
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| T |
28224964 |
ttaatcttaaatttatggtgaaatgttatccttttattg-----------actttcctctcactttcctcttctgtcaaaatcttttgattttttttgtt |
28224876 |
T |
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| Q |
215 |
gttcatgaatcatagtatctttctttgaggagtagaaaaaattgattctctttctagcttaaccctttttactagttgtctaatactatctcttttaacc |
314 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28224875 |
gttcatgaatcatagcttctttctttgaggagttgaaaaaattgattctttttctagcttaaccctttttactagttgtctagtactatctcttttaacc |
28224776 |
T |
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| Q |
315 |
aagtactgttcctttcctttg |
335 |
Q |
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||||||||||||||||||||| |
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| T |
28224775 |
aagtactgttcctttcctttg |
28224755 |
T |
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