View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_22 (Length: 310)
Name: NF12850_low_22
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 4122919 - 4123196
Alignment:
| Q |
16 |
ggacatcaaaaactacagaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaa |
115 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
4122919 |
ggacttcaaaaacaacagaataacctttggagttgaaacttaaccaatttgggtaattatcacaggggagcaaaacactaccacccccgtcgacagtcaa |
4123018 |
T |
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| Q |
116 |
attctgtaaaaaagtggaaataaatactaatatcacaatcatttaacaatgatataatactcctcataagataattattcgtattttgatcagtaaaaat |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123019 |
attctgtaaaaaagtggaaataaacactaatatcacaatcatttaacaatgatataatactcctcataagataattattcgtattttgatcagtaaaaat |
4123118 |
T |
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| Q |
216 |
taaaacaatgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123119 |
taaaacaatgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctat |
4123196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 4362572 - 4362452
Alignment:
| Q |
16 |
ggacatcaaaaactacagaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaa |
115 |
Q |
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|||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4362572 |
ggacttcaaaaattacagaataacctttggcgttgaaacttaaccaatttgggtaatcatcaccagggagcaaaaaactaccacgcccatcgacagtcaa |
4362473 |
T |
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| Q |
116 |
attctgtaaaaaagtggaaata |
137 |
Q |
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|||||||| ||||||||||||| |
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| T |
4362472 |
attctgta-aaaagtggaaata |
4362452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 4346376 - 4346265
Alignment:
| Q |
16 |
ggacatcaaaaactacagaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaa |
115 |
Q |
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|||| ||||| | ||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4346376 |
ggacttcaaagattacagaataacctttggagttgaaagttgaccaatttgggtaattatcaccggggagcaaaaaactaccacgcccatcgacagtcaa |
4346277 |
T |
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| Q |
116 |
attctgtaaaaa |
127 |
Q |
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|||||||||||| |
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| T |
4346276 |
attctgtaaaaa |
4346265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 4336922 - 4336802
Alignment:
| Q |
16 |
ggacatcaaaaactacagaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaa |
115 |
Q |
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|||| |||||| ||||||||||||||| ||||||||| ||||||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||||| |
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| T |
4336922 |
ggacttcaaaatttacagaataacctttcgagttgaaagctaaccaatttgggtaatcatcactggggagcaaaaagctaccacacccatcgacagtcac |
4336823 |
T |
|
| Q |
116 |
attctgtaaaaaagtggaaata |
137 |
Q |
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||||||| | |||||||||||| |
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| T |
4336822 |
attctgt-agaaagtggaaata |
4336802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 4336751 - 4336662
Alignment:
| Q |
167 |
atataatactcctcataagataattattcgtattttgatcagtaaaaattaaaacaatgatatttggacaccccaattttccaaacactcatt |
259 |
Q |
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| T |
4336751 |
atataacattcctcaaaagataatta---gtattttgataaataaaaattacaacaatgatatttggacaccccaattttcgaaacaatcatt |
4336662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 4319577 - 4319686
Alignment:
| Q |
16 |
ggacatcaaaaactacagaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaa |
115 |
Q |
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|||| ||||||| ||||||| |||||| || |||||| |||||||| ||| |||||||||| ||||| |||||| |||| || |||||| |||||| |
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| T |
4319577 |
ggacttcaaaaattacagaagaaccttctgaattgaaagctaaccaatccgggtaattatcacaagggagtgaaaaacgaccatgctcatcgatagtcaa |
4319676 |
T |
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| Q |
116 |
attctgtaaa |
125 |
Q |
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|||||||||| |
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| T |
4319677 |
attctgtaaa |
4319686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 9233222 - 9233288
Alignment:
| Q |
223 |
atgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttc |
289 |
Q |
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||||||||| |||||| || ||| || ||||||||| ||||||||||||| |||| |||||||||| |
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| T |
9233222 |
atgatattttaacaccctaactttacatacactcattcaacacttcattttatcttcatctctcttc |
9233288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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