View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_24 (Length: 304)
Name: NF12850_low_24
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 8862855 - 8862985
Alignment:
| Q |
77 |
ccgaaggctcaccttgtctcatatcctaccaactccaatggaaggaacaatcattgcttctttgaatatagttcttctccttctccaagactagagtact |
176 |
Q |
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| T |
8862855 |
ccgaaggctcaccttgtctcatatcctaccaactccaatggtaggaacaatcattgcttctttgaatatagttcttctccttctccaagactagagtact |
8862954 |
T |
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| Q |
177 |
attatgaagcaaattcaacgactggtgaaag |
207 |
Q |
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| T |
8862955 |
attatgaagcaaattcaacgactggtgaaag |
8862985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 8863013 - 8863068
Alignment:
| Q |
235 |
aataaaactttcttgataactacat-catgctttcaatctaattataagatttggt |
289 |
Q |
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| T |
8863013 |
aataaaactttcttgatgactacatgcatgctttcaatctaattataagatttggt |
8863068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 8862818 - 8862858
Alignment:
| Q |
26 |
gtccaacaaaacactttgctgcaaaagatttccggttccga |
66 |
Q |
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| T |
8862818 |
gtccaccaaaacactttgctgcaaaagatttccggttccga |
8862858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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