View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12850_low_25 (Length: 302)
Name: NF12850_low_25
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_25 |
 | |
|
| [»] chr5 (11 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 39487804 - 39487519
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487804 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
39487705 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487704 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
39487605 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487604 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
39487519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 39476851 - 39476566
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| | ||| ||||||||||||||| | |||||||||||| |
|
|
| T |
39476851 |
aagatccaccttctaacaaagtcttcttactcttttcactcatctctttcactttcttccttacatctgcatccttatccaacacactccttattcctcg |
39476752 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| || | ||| ||||| |||||||||| || || ||||||||||| ||||| |||||||||||| |
|
|
| T |
39476751 |
ctcaattttatcggcagttacaagatagttaggcctaccacttaactccaccctataatccaatgcgatatccacacctatcttcagctcacacaccaat |
39476652 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476651 |
tcaaaagcattagcctgttgttcagcaaagagtggccatgcggcaattggtacaccaaaatatatgctctcgagtgttgaattcca |
39476566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 39473369 - 39473084
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
39473369 |
aagatccaccttctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacatctccatccttatccaacacactccttattcctct |
39473270 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||||||| || || |||||||||| | |||||| || |||||||||| |||||||||||| |
|
|
| T |
39473269 |
ctcaatcttatcggcagttacaagatagttaggcgcaccattaaactccgccctataatccaacgaaatttcaactcctattttcaactcacacaccaat |
39473170 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
||||||||||||| |||||| || ||||| |||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
39473169 |
tcaaaagcattagtctgttgttctgcataaagtggccatgcggctataggcacaccaaaataaatgctctcgagtactgaattcca |
39473084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 39484604 - 39484317
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||| | | ||||||| ||| | | ||||||||||||| ||||| | |||||||| |||| |
|
|
| T |
39484604 |
aagatccaccctctaacaaagtcttcctactcttctcactcatttttttcactttcttcttaacctctccatccttatacaacacactccttattactct |
39484505 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacac--ctattttcagttcacacacca |
214 |
Q |
| |
|
||||||||| || ||| ||||||||||||||| | | || ||||| ||| | |||||||||| ||||| ||||||| |||| | ||| |||||||||| |
|
|
| T |
39484504 |
ctcaatcttgtcggcacttacaagatagttagactcaccactaaactccatcctataatccaatgcaatctccacacacctatctgcagctcacacacca |
39484405 |
T |
|
| Q |
215 |
attcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39484404 |
attcaaaagcattagcctgttgttcaacaaagagtggccatgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
39484317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 39452339 - 39452054
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
||||||| || ||||||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| | ||||||||||| | |
|
|
| T |
39452339 |
aagatcctccttctaacagagtcttcttactcttttcactcatctctttcatttttttcctgaactctccatccttatccaacacactccttattccttt |
39452240 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
||||||||| || ||||| | |||||||||||| || |||||| ||||| ||||||| || ||||| ||||| || |||| |||||||||||| |
|
|
| T |
39452239 |
ctcaatcttgtcagcagtcaaaagatagttaggaccactgttaaactccaccctataatctaacgcaatctccacggaaatcttcaactcacacaccaat |
39452140 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||| | ||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39452139 |
tcaaaagcattaacctgttgctcagcaaagagcggccatgttgcaatgggcacaccaaaatatatgctctcgagtgtggaattcca |
39452054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 39461592 - 39461307
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| || |||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
39461592 |
aagatccaccctctaacaaagttttcctactcttttcactcatctctttcactttctttctgacctctccatccttttccaacacattccttattcctct |
39461493 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| | |||| ||| |||| ||||||| || |||| |||||| | || ||||| ||| |||||| |
|
|
| T |
39461492 |
ctcaatcttgtcagcagttacaagatagttaggctcaccattgaactccactctataatctaacacaatctccacagccatcttcagctcatgcaccaac |
39461393 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
| ||||||||||| |||||| |||||| |||| ||||||| |||||| |||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
39461392 |
tgaaaagcattagtctgttgttcagcaaagagcggccacgtggcaatgggcacaccaaaatacatgctctcgagtattgaattcca |
39461307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 39455967 - 39455682
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||| || ||||||||||||||||| | | ||||||||||||| |
|
|
| T |
39455967 |
aagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcactgttttcctaaactctccatccttatccaatacactccttattcctct |
39455868 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||||| | || || ||||| ||||||| | ||||| |||||| | || ||||| |||||||||||| |
|
|
| T |
39455867 |
ctcaatcttgtccgaagttaaaagatagttaggcccactactatactccaccctataatctagcgcaatctccacagcaatcttcagctcacacaccaat |
39455768 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
||||||||| || ||||||| |||||| |||| ||||| | ||||| ||||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
39455767 |
tcaaaagcagtaacctgttgttcagcaaagagcggccatgttgcaatgggcacaccaaagtatatgccctcgagtgtggaattcca |
39455682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 39463391 - 39463676
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
39463391 |
aagatcctccctctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacttctccatccttatctaacacactccttattcctct |
39463490 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | || |||| |||| | |||||||| | ||| ||||| | || || | |||||||||| | |
|
|
| T |
39463491 |
ctcaatcttatcagcagttacaagatagttaggctcgccaagaaactccactctgtaatccaatgaaatctccaccgccatctttaactcacacaccagt |
39463590 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
||||||||||| | |||||| |||||| ||| ||||| | ||||| || |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
39463591 |
tcaaaagcatttgtctgttgttcagcaaagatcggccaagtggcaagtggaacaccaaaatatatgctctccagtgtcgaattcca |
39463676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 39457129 - 39457414
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
||||||| || ||||||| |||||||||||| | ||||||||||| ||||||| ||||| | ||||||||||||||||||| | || |||||||||| |
|
|
| T |
39457129 |
aagatcctccatctaacagagtcttcttacttgctgcactcatctctttcactttcttccttacctctccatccttatccaacacactctttattcctct |
39457228 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
||||||||| || ||||||| ||||||||||| | | |||||||| | | | ||||||| || ||||| |||||| | || ||||| ||||| |||||| |
|
|
| T |
39457229 |
ctcaatcttgtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaatgcaatctccacagccatcttcagctcacataccaat |
39457328 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
| ||| ||||| | ||| || |||||| |||| ||||||| ||||| ||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
39457329 |
tgaaatgcatttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatatatgttctcgagtgtggaattcca |
39457414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 43311364 - 43311649
Alignment:
| Q |
17 |
aagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctct |
116 |
Q |
| |
|
||||||||||||||||||| |||||| ||| | ||||||||||||| ||||||| ||||| | |||||||| | ||||||| | ||||||||||| | |
|
|
| T |
43311364 |
aagatccaccctctaacaatgtcttcctacaatgttcactcatctctttcactttcttccttacctctccatctgtttccaacacactccttattccttt |
43311463 |
T |
|
| Q |
117 |
ctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaat |
216 |
Q |
| |
|
||| ||||| || | || || |||||| | | |||| ||| || ||| | ||||||||| ||||| |||||||| || ||||| ||| |||| | | |
|
|
| T |
43311464 |
ctcgatcttgtctgaagctaaaagataatcacgcccaacatcgtactccatcctataatccactgcaatctccacacccatcttcagctcagacacaagt |
43311563 |
T |
|
| Q |
217 |
tcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattcca |
302 |
Q |
| |
|
| ||||||||| | ||||| |||||| |||||||||| | |||||||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
43311564 |
tgaaaagcattggtttgttgatcagcaaagagtggccatgtggcaataggcacaccataatatatgctctcgagagtcgaattcca |
43311649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 39452831 - 39452943
Alignment:
| Q |
36 |
agtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctctctcaatcttatccgcagtt |
135 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||| || || | ||||||||||||| ||||| | || |||||||||||||||| || ||||||||| |
|
|
| T |
39452831 |
agtcttcttacatgtttcacttatctcttgcactttctttcttacctctccatccttatacaacacactctttattcctctctcaattttgtccgcagtt |
39452930 |
T |
|
| Q |
136 |
acaagatagttag |
148 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
39452931 |
aaaagagagttag |
39452943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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