View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12850_low_27 (Length: 290)
Name: NF12850_low_27
Description: NF12850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12850_low_27 |
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| [»] scaffold1598 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 225681 - 225940
Alignment:
| Q |
16 |
gttttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttccct |
115 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225681 |
gttttaccgtgcgagatgtagtagcttgtaacacaacaacaggctttctctttatcagctcaaagttgtaaaaaacttcctttgatagattgttttccct |
225780 |
T |
|
| Q |
116 |
tgcaaatctacggattccaatagttattcgcattgctggttttcctggtctatccaatacacaagaaacttcccactgctttccttgataattttggagc |
215 |
Q |
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||||||||||| || |||| | || |||||||||| || ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225781 |
tgcaaatctacagaatccactcgtaattcgcattggtgttttacttgctctatccaatacacaagaaacttcccactgctttccttgataattttggagc |
225880 |
T |
|
| Q |
216 |
atgaacggaacatttggcttcagatgctccttagcaaattcaccaggaacatactacaca |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225881 |
atgaacggaacatttggcttcagatgctccttagcaaattcaccaggaacatactacaca |
225940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 211219 - 211477
Alignment:
| Q |
17 |
ttttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttccctt |
116 |
Q |
| |
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||||||| || ||||||| ||| |||||| |||||||||||||||| |||||||||||| |||| ||| |||| | | | ||| ||||||||||| |
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| T |
211219 |
ttttaccatgtgagacgctgtaacttgtatcacaacaacaggcttcttcttgatcagcttaaagcgacaaataactccatctaataacttgttttcccta |
211318 |
T |
|
| Q |
117 |
gcaaatctacggattccaatagttattcgcattgctggttttcctggtctatccaatacacaagaaacttcccactgctttccttgataattttggagca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
211319 |
agaaatctacggattccaatagttattcgcattgctggttttcctggtctatccaatgcaccagaaacttcccactgctttttttgagaattttggagca |
211418 |
T |
|
| Q |
217 |
tgaacggaacatttggcttcagatgctccttagcaaattcaccaggaacatactacaca |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
211419 |
tgaacggaacatttggcttcagatgctccttagcaaattcaccaggaacatactacaca |
211477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 204147 - 203934
Alignment:
| Q |
16 |
gttttaccgtgcgagacgcagtagcttgtaacacaacaaca---ggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttc |
112 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||| ||| | ||||||||||||| |
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| T |
204147 |
gttttaccgtgcaagacgcagtaacttgtaacacaacaacaacaggcttcctcttgatcagctcaaacacatatgtaactccctctaatagattgttttc |
204048 |
T |
|
| Q |
113 |
ccttgcaaatctacggattccaatagttattcgcattgctggttttcctggtctatccaatacacaagaaacttcccactgctttccttgataattttgg |
212 |
Q |
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|||||||||| ||| || |||| | ||||||||||||| || |||||| | ||| ||| | | || ||||||| |||| |||||||||||| |||||| |
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| T |
204047 |
ccttgcaaatttactgaatccactcgttattcgcattgatgagtttccttttgtattcaaaaaaaaaaaaacttcgcactactttccttgatagttttgg |
203948 |
T |
|
| Q |
213 |
agcatgaacggaac |
226 |
Q |
| |
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|||||||||||||| |
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| T |
203947 |
agcatgaacggaac |
203934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 197845 - 198045
Alignment:
| Q |
40 |
cttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttcccttgcaaatctacggattccaatagt |
139 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||| || |||| ||| | |||||||||||||||||||||| ||| || |||| || |
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| T |
197845 |
cttgtagcacaacaacaggctttctcttgatcagctcaaacacatatgtaactccctctagtagattgttttcccttgcaaatttaccgaatccaccggt |
197944 |
T |
|
| Q |
140 |
tattcgcattgctggttttcctggtctatccaatacacaagaaacttcccactgctttccttgataattttggagcatgaacggaacatttggcttcaga |
239 |
Q |
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|||||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||| || ||||| |
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| T |
197945 |
tattcgcatttgcgaatttcctttgttatgcaatacacaataaacttcccactgctttccttgagaattttggagcttgaacggaacctttagcgtcaga |
198044 |
T |
|
| Q |
240 |
t |
240 |
Q |
| |
|
| |
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|
| T |
198045 |
t |
198045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 216674 - 216742
Alignment:
| Q |
175 |
cacaagaaacttcccactgctttccttgataattttggagcatgaacggaacatttggcttcagatgct |
243 |
Q |
| |
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|||| |||||||||||||||||||| ||| ||||||||||| | | ||||||||||| |||||||||| |
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| T |
216674 |
cacatgaaacttcccactgctttccgtgagaattttggagctttataggaacatttggattcagatgct |
216742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 48762534 - 48762427
Alignment:
| Q |
18 |
tttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttcccttg |
117 |
Q |
| |
|
||||||||| |||| || || ||||||||||| || || ||||||||||| | |||||| | |||| |||||| | ||||||||||||||| |||| |
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| T |
48762534 |
tttaccgtgtgagaagctgtgacttgtaacacagcatgagatttcctcttgataaactcaaactcataaataacttcatctgatagattgttttctcttg |
48762435 |
T |
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| Q |
118 |
caaatcta |
125 |
Q |
| |
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|||||||| |
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| T |
48762434 |
caaatcta |
48762427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 6904343 - 6904551
Alignment:
| Q |
16 |
gttttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagt--tgtaaaaaacttcctttgatagattgttttcc |
113 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| || ||| |||||||||||||||| |
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| T |
6904343 |
gttttaccgtgcaagacgcagtaacttgtaacacaacaacaggcttcctcttgatcaactcaaacccatgtaa----ctccctctgatagattgttttcc |
6904438 |
T |
|
| Q |
114 |
cttgcaaatctacggattccaatagttattcgcattgctggttttcctggtctatccaatacacaagaaacttcccactgctttccttgataattttgga |
213 |
Q |
| |
|
||||||||| ||| || |||| | ||||||||||||| || |||||| | ||| ||| | |||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
6904439 |
cttgcaaatttactgaatccactcgttattcgcattgatgagtttccttttgtattcaaaatacaataaacttcccactgctttccttgatagttttgga |
6904538 |
T |
|
| Q |
214 |
gcatgaacggaac |
226 |
Q |
| |
|
|||||||| |||| |
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|
| T |
6904539 |
gcatgaacagaac |
6904551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 34121900 - 34121766
Alignment:
| Q |
18 |
tttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttcccttg |
117 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||| | |||| |||| | | |||||||||||||||| | |
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|
| T |
34121900 |
tttaccgtgtgagacgccgtaacttgtaacacaacatgaggcttcctcttgatcagctcaaactcataaataactccatcaaatagattgttttccctcg |
34121801 |
T |
|
| Q |
118 |
caaatctacggattccaatagttattcgcattgct |
152 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||| |
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| T |
34121800 |
caaatctaaagaatccaaacgttattcgcattgct |
34121766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 5170256 - 5170149
Alignment:
| Q |
18 |
tttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttcccttg |
117 |
Q |
| |
|
||||||||| |||| || || ||||||||||| || ||| ||||||||||||| |||||| | |||| |||||| | ||||||||||||||| |||| |
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| T |
5170256 |
tttaccgtgtgagaagctgtgacttgtaacacagcatgaggtttcctcttgatcaactcaaactcataaataacttcatctgatagattgttttctcttg |
5170157 |
T |
|
| Q |
118 |
caaatcta |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
5170156 |
caaatcta |
5170149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 7016033 - 7015948
Alignment:
| Q |
40 |
cttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttcccttgcaaatcta |
125 |
Q |
| |
|
||||||||||| || ||| ||||||||||||| |||||| | |||| |||||| | ||||||||||||||| |||||||||||| |
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|
| T |
7016033 |
cttgtaacacatcatgaggtttcctcttgatcaactcaaactcataaataacttcatctgatagattgttttctcttgcaaatcta |
7015948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 41751870 - 41751763
Alignment:
| Q |
18 |
tttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttcccttg |
117 |
Q |
| |
|
||||||||| |||| || || ||| ||||||| || ||| ||||||||||||| |||||| | |||| |||||| | ||||||||||||||| |||| |
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|
| T |
41751870 |
tttaccgtgtgagaagctgtgacttataacacagcatgaggtttcctcttgatcaactcaaactcataaataacttcatctgatagattgttttctcttg |
41751771 |
T |
|
| Q |
118 |
caaatcta |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
41751770 |
caaatcta |
41751763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1598 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1598
Description:
Target: scaffold1598; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 1483 - 1376
Alignment:
| Q |
18 |
tttaccgtgcgagacgcagtagcttgtaacacaacaacaggcttcctcttgatcagctcaaagttgtaaaaaacttcctttgatagattgttttcccttg |
117 |
Q |
| |
|
||||||||| |||| || || ||||||||||| || || ||||||||||| | |||||| | |||| |||||| | ||||||||||||||| |||| |
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| T |
1483 |
tttaccgtgtgagaagctgtgacttgtaacacagcatgagatttcctcttgataaactcaaactcataaataacttcatctgatagattgttttctcttg |
1384 |
T |
|
| Q |
118 |
caaatcta |
125 |
Q |
| |
|
|||||||| |
|
|
| T |
1383 |
caaatcta |
1376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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